PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g09520
Common NameGSCOC_T00026893001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 282aa    MW: 30591.7 Da    PI: 4.9626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g09520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1871120255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Cc08_g09520  71 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 120
                  69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.89E-3270130No hitNo description
PfamPF008473.8E-1270120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3171129IPR001471AP2/ERF domain
SMARTSM003806.2E-3771134IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2171129IPR016177DNA-binding domain
PROSITE profilePS5103223.20971128IPR001471AP2/ERF domain
PRINTSPR003671.2E-97283IPR001471AP2/ERF domain
PRINTSPR003671.2E-994110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MICLTMTTDQ LQSLEPESSS NSIFSFSSSP TSPLSPNTAL KTSQNQSNNS NNQDAESKKI  60
KRIRDSSKHP LYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPSPEMAARA HDVAALSIKG  120
TSAILNFPEL AGSLPRPASL SPRDVQAAAA KAAAMEKFDS LSSSSSSTSS TSPSSSNGRT  180
ATSLTLSSSS SLSSLVSAID LSTTSDELSE IVELPSLGTM SFNETSMELR NDDFAYSDSV  240
DGWLYPPPDQ QLWMMSRNGH DDQDDQGGFS SGFESLLWNY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1866129973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082928.10.0ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-69DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A068UI560.0A0A068UI56_COFCA; Uncharacterized protein
STRINGXP_002516502.16e-80(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]