PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g09520 | ||||||||
Common Name | GSCOC_T00026893001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 30591.7 Da PI: 4.9626 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8.1e-18 | 71 | 120 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g Cc08_g09520 71 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 120 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.89E-32 | 70 | 130 | No hit | No description |
Pfam | PF00847 | 3.8E-12 | 70 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-31 | 71 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-37 | 71 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-21 | 71 | 129 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.209 | 71 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MICLTMTTDQ LQSLEPESSS NSIFSFSSSP TSPLSPNTAL KTSQNQSNNS NNQDAESKKI 60 KRIRDSSKHP LYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPSPEMAARA HDVAALSIKG 120 TSAILNFPEL AGSLPRPASL SPRDVQAAAA KAAAMEKFDS LSSSSSSTSS TSPSSSNGRT 180 ATSLTLSSSS SLSSLVSAID LSTTSDELSE IVELPSLGTM SFNETSMELR NDDFAYSDSV 240 DGWLYPPPDQ QLWMMSRNGH DDQDDQGGFS SGFESLLWNY Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 66 | 129 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027082928.1 | 0.0 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 3e-69 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A068UI56 | 0.0 | A0A068UI56_COFCA; Uncharacterized protein | ||||
STRING | XP_002516502.1 | 6e-80 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-56 | ERF family protein |
Publications ? help Back to Top | |||
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