PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g09030
Common NameGSCOC_T00017242001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 988aa    MW: 108647 Da    PI: 4.8065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g09030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.6e-193783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
      Cc08_g09030 37 RGQWTPEEDEILRQAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     89*****************************9.************986 PP
2Myb_DNA-binding65.97.3e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
      Cc08_g09030  89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding46.67.9e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
      Cc08_g09030 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4413283IPR017930Myb domain
SuperFamilySSF466894.67E-163389IPR009057Homeodomain-like
SMARTSM007177.7E-163685IPR001005SANT/Myb domain
PfamPF002491.1E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-233895IPR009057Homeodomain-like
CDDcd001671.79E-144083No hitNo description
PROSITE profilePS5129433.95384139IPR017930Myb domain
SuperFamilySSF466891.35E-3186182IPR009057Homeodomain-like
SMARTSM007176.5E-2088137IPR001005SANT/Myb domain
PfamPF002492.6E-1989135IPR001005SANT/Myb domain
CDDcd001671.78E-1791135No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2796142IPR009057Homeodomain-like
PROSITE profilePS5129418.922140190IPR017930Myb domain
SMARTSM007172.2E-14140188IPR001005SANT/Myb domain
PfamPF002495.7E-13141184IPR001005SANT/Myb domain
CDDcd001673.85E-11143183No hitNo description
Gene3DG3DSA:1.10.10.603.0E-21143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MESDRTSTTR SDGGSDSLPR VRPAHGRTSG PTRRSTRGQW TPEEDEILRQ AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLA QFQGLPNAIH PNQSAAAASS KTQQSSEDDS VPRDGAEMED  240
VSQCSQGSTA VGCSSSTSEM ANTNVYARED CFEHNLQDWD PSIGKDWQLT QNELPDMSSL  300
DLGQEASGQF MLSSSGQFIH ELVNFPLQSS MGLSNSTSMV NMVLGSDKAD QFLTTEVGCS  360
RIVYPEVRND GSFAPESSPV NEATDSLLYQ TSSYHVTFPS QSCNPLQSDV LGTSFGEPFS  420
VPSQLPSDDG SLIFNIDPNL FNDSSVGNSE KECFTGRYDG FIYSNDSGGS TNNHTEFGMV  480
VQPVEGKDSA KLVPVNDFGL TPPKDIQTSP PVEEHPVISD EQKDSGALFY EPPRFPSLDV  540
PFFSCDLIQS GNDMQQEYSP LGIRQLMMSS VNCLTPFRLW DSPSGDDSPD AVLRSAAKTF  600
TCTPSILKKR HRDLVSPLSE KRCEKKLESD VNQESFSTLT RDFSRLDVMF DETQNENQSM  660
LSPTNQGSNC EMLLTEDKEN LVPATTEGDK EDVKVDSPSS ANIVSEKHTN ANFPLDKMNQ  720
PSGVLVEHDM NDTLFFSPDR CGTTSDKAFG LSAKACGNKY SGRLDAGLHK GAASSETRCL  780
SIVCSPRISG KKDGLNVVTT ASMQLASSST PMGKKVETSG NICGVENISI FGETPFRRSI  840
ESPSAWKSPW FFNTFLPGPR VDTDITIEDI EYLMSPGDRS YDALGLMKQL SEHTASAFAN  900
AQEVLGDETP ETILKKSSKI LNSDKQQNDL LICQQEHHST VGSNVMTECR TLDFSECGTP  960
AKGAETGKLS TGVSFSSPSS YLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-69371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-69371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085372.10.0transcription factor MYB3R-1-like isoform X1
TrEMBLA0A068V5X20.0A0A068V5X2_COFCA; Uncharacterized protein
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein