PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g07780
Common NameGSCOC_T00011870001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 229aa    MW: 25403.9 Da    PI: 4.8322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g07780genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-182473255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Cc08_g07780 24 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 73
                 8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-202481IPR016177DNA-binding domain
CDDcd000184.39E-292482No hitNo description
PROSITE profilePS5103221.8912481IPR001471AP2/ERF domain
SMARTSM003803.1E-322487IPR001471AP2/ERF domain
PfamPF008476.7E-112473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-292482IPR001471AP2/ERF domain
PRINTSPR003671.9E-92536IPR001471AP2/ERF domain
PRINTSPR003671.9E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MFKPSCSSSA PASSSIASQE AQVKYKGVRK RKWGKWVSEI RLPNSRERIW LGSYDSAEKA  60
ARAFDAALFC LRGKNAKFNF ADIPPDLVGG RSLTPAEIQA VASEYANRYG NKEKQQQQGE  120
GLIGEKEDDP LQFDQDTSPI SSNSDGALQN VDWSFLGMLE PNGAATGATS NAPDYDLMLS  180
SLDNLHEDMY MTPHVGTKVD VDHNFNGQHE DYQHLDENYS HQSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1424801471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084227.11e-172ethylene-responsive transcription factor ERF017-like
TrEMBLA0A068VAW61e-170A0A068VAW6_COFCA; Uncharacterized protein
STRINGPOPTR_0006s23480.12e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-44ERF family protein