PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g06100
Common NameGSCOC_T00003130001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 404aa    MW: 45699.1 Da    PI: 6.9464
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g06100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.3e-92223991373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ Ll  A  v+++d e a   L+ l +++  +gd++qR+aayf+ +L arl+   s  y+ +  ++t+    +ee+ a++ f++vsP+++f+h+ta
  Cc08_g06100  22 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAHFTA 115
                  57899999***********************************************9*****999988887....688889999*************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlvakrled 188
                  Nq I e +e+e     + +H+iDfdis+G+QWp+L+q+L++ +  ++  sl+iTg+g+    s eel+et+ rL +fA++++ ++fef+ l    l  
  Cc08_g06100 116 NQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL----LRG 205
                  **********989885556*********************877657788*********....******************9559******8....455 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    l +Lr k+ E+++Vnlvl+l +l   +vs   +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+  lp +s +r ++E
  Cc08_g06100 206 SMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPVDSANRLSIE 298
                  55699*****************9997..333...35589*********************************************************** PP

         GRAS 287 rellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg....yrveee.sgslv.lgWkdrpLv 368
                  +  lg+ei++v    +++     r e++e+W+ r+e+ GF+ ++ls++   qaklll+        +++  g    +r+ e+ +g ++ lgW+dr L+
  Cc08_g06100 299 KNHLGKEIKSVMNYDKDHvnISPRYERMETWKGRMESHGFSGAKLSSRSLIQAKLLLKirshcspiQFD--GgnggFRIFEKaDGKAIsLGWQDRCLI 394
                  ************99888743568**********************************833322222222..223348876444777777********* PP

         GRAS 369 svSaW 373
                  ++SaW
  Cc08_g06100 395 TASAW 399
                  ***** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.7051368IPR005202Transcription factor GRAS
PfamPF035141.8E-8922399IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MREQMFNQKK DGGVEDGKGL HLIHSLLISA SSVDENDIES AVDNLCDLYQ NVCLSGDSLQ  60
RVAAYFADGL VARLLTRKSP FYDMIMKTPT PEEEFLAFTE FYKVSPFYQF AHFTANQSII  120
ETFEKEEPNN SRVLHVIDFD ISYGFQWPSL IQSLSEIATA NKRVSLKITG FGRSMEELQE  180
TETRLVSFAK SFRSLNFEFQ GLLRGSMLGS LRRKKSETVV VNLVLHLNTL NNVSKISETL  240
KCVNLINPSI VVMVEHEGSR TPQNFLSRFM ESLHYFAAMF DSLDDCLPVD SANRLSIEKN  300
HLGKEIKSVM NYDKDHVNIS PRYERMETWK GRMESHGFSG AKLSSRSLIQ AKLLLKIRSH  360
CSPIQFDGGN GGFRIFEKAD GKAISLGWQD RCLITASAWH CVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-523039927378Protein SCARECROW
5b3h_A2e-523039926377Protein SCARECROW
5b3h_D2e-523039926377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027071949.10.0protein SCARECROW 1-like
TrEMBLA0A068VB220.0A0A068VB22_COFCA; Uncharacterized protein
STRINGXP_009620664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.19e-48GRAS family protein