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Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc08_g06100 |
Common Name | GSCOC_T00003130001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
GRAS |
Protein Properties |
Length: 404aa MW: 45699.1 Da PI: 6.9464 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc08_g06100 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 300.1 | 5.3e-92 | 22 | 399 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l++ Ll A v+++d e a L+ l +++ +gd++qR+aayf+ +L arl+ s y+ + ++t+ +ee+ a++ f++vsP+++f+h+ta
Cc08_g06100 22 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAHFTA 115
57899999***********************************************9*****999988887....688889999*************** PP
GRAS 99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlvakrled 188
Nq I e +e+e + +H+iDfdis+G+QWp+L+q+L++ + ++ sl+iTg+g+ s eel+et+ rL +fA++++ ++fef+ l l
Cc08_g06100 116 NQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL----LRG 205
**********989885556*********************877657788*********....******************9559******8....455 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
l +Lr k+ E+++Vnlvl+l +l +vs +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+ lp +s +r ++E
Cc08_g06100 206 SMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPVDSANRLSIE 298
55699*****************9997..333...35589*********************************************************** PP
GRAS 287 rellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg....yrveee.sgslv.lgWkdrpLv 368
+ lg+ei++v +++ r e++e+W+ r+e+ GF+ ++ls++ qaklll+ +++ g +r+ e+ +g ++ lgW+dr L+
Cc08_g06100 299 KNHLGKEIKSVMNYDKDHvnISPRYERMETWKGRMESHGFSGAKLSSRSLIQAKLLLKirshcspiQFD--GgnggFRIFEKaDGKAIsLGWQDRCLI 394
************99888743568**********************************833322222222..223348876444777777********* PP
GRAS 369 svSaW 373
++SaW
Cc08_g06100 395 TASAW 399
***** PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MREQMFNQKK DGGVEDGKGL HLIHSLLISA SSVDENDIES AVDNLCDLYQ NVCLSGDSLQ 60 RVAAYFADGL VARLLTRKSP FYDMIMKTPT PEEEFLAFTE FYKVSPFYQF AHFTANQSII 120 ETFEKEEPNN SRVLHVIDFD ISYGFQWPSL IQSLSEIATA NKRVSLKITG FGRSMEELQE 180 TETRLVSFAK SFRSLNFEFQ GLLRGSMLGS LRRKKSETVV VNLVLHLNTL NNVSKISETL 240 KCVNLINPSI VVMVEHEGSR TPQNFLSRFM ESLHYFAAMF DSLDDCLPVD SANRLSIEKN 300 HLGKEIKSVM NYDKDHVNIS PRYERMETWK GRMESHGFSG AKLSSRSLIQ AKLLLKIRSH 360 CSPIQFDGGN GGFRIFEKAD GKAISLGWQD RCLITASAWH CVQ*
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