PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g05370

Common Name

GSCOC_T00024299001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 389aa MW: 43597 Da PI: 6.5327

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g05370	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.6	3.5e-32	78	169	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+i++++e+ ++isws++g+sf+v+d+++fa +vL kyF+h+nf+SFv QLn+YgF+k++ ++ eF++ +F+kgkk+ l+kik Cc08_g05370 78 FLLKVYDIVKNPEIYSIISWSSSGTSFIVWDPHRFAAEVLGKYFRHNNFSSFVCQLNTYGFRKINWDR---------LEFQNAWFQKGKKSWLKKIK 165 9**************************************************************999.........78**************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ + Cc08_g05370 166 RRIQ 169 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.1E-42	74	167	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.44E-30	74	167	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.6E-32	75	167	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.1E-14	78	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.1E-28	78	167	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-14	116	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-14	129	141	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MKATNQETSE VTNSTKYELK NGENEGERVN PTIPMGTDVS ESSSNAIVTA AVAVSTTPLA 60 KEGYANGASS RVRAPPPFLL KVYDIVKNPE IYSIISWSSS GTSFIVWDPH RFAAEVLGKY 120 FRHNNFSSFV CQLNTYGFRK INWDRLEFQN AWFQKGKKSW LKKIKRRIQG TQNAHLLKPL 180 EIEGQLSLSR EQKKFESLMQ EHDALKVETM KLKDMEANLV KEMETLEKQA QCITSKQQNM 240 LKYMIHEVLI RKKEMQSNDA ANDQGSGGRQ SIESSVELLY EGGTSHGSQK NSPRAQSGTG 300 KTFSNVDLST AIQEEEDCTV SMGKFSNFYT AVYSSLEKQL MDDISCENVA EEKRANLQQN 360 DVIPLEDLIE GPADWNEFAK GIGNKARS*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MKATNQETSE VTNSTKYELK NGENEGERVN PTIPMGTDVS ESSSNAIVTA AVAVSTTPLA  60
KEGYANGASS RVRAPPPFLL KVYDIVKNPE IYSIISWSSS GTSFIVWDPH RFAAEVLGKY  120
FRHNNFSSFV CQLNTYGFRK INWDRLEFQN AWFQKGKKSW LKKIKRRIQG TQNAHLLKPL  180
EIEGQLSLSR EQKKFESLMQ EHDALKVETM KLKDMEANLV KEMETLEKQA QCITSKQQNM  240
LKYMIHEVLI RKKEMQSNDA ANDQGSGGRQ SIESSVELLY EGGTSHGSQK NSPRAQSGTG  300
KTFSNVDLST AIQEEEDCTV SMGKFSNFYT AVYSSLEKQL MDDISCENVA EEKRANLQQN  360
DVIPLEDLIE GPADWNEFAK GIGNKARS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	1e-22	76	168	8	111	Heat shock factor protein 1
5hdn_A	1e-22	76	168	8	111	Heat shock factor protein 1
5hdn_B	1e-22	76	168	8	111	Heat shock factor protein 1
5hdn_C	1e-22	76	168	8	111	Heat shock factor protein 1
5hdn_D	1e-22	76	168	8	111	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	LKKIKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083454.1	0.0	heat stress transcription factor A-7a-like
TrEMBL	A0A068UHR1	0.0	A0A068UHR1_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16030	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-30	heat shock transcription factor A2