PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g05360
Common NameGSCOC_T00024298001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 344aa    MW: 39730.5 Da    PI: 8.4051
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g05360genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.61.1e-29431352103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed e++++isw+ +g+s+++ld+ +fa +vLpkyFkhsn++SF+ QLn YgF+k+  ++          e+++k+F++g+++ll +i+
   Cc08_g05360  43 FLMKTFQMVEDTETNNMISWNFEGTSLIILDHLKFAAEVLPKYFKHSNLSSFIYQLNNYGFRKIGLRQ---------YEYENKWFQRGQEHLLMNIR 130
                   9***************************************************************9988.........78****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++ e
   Cc08_g05360 131 RRNDE 135
                   *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3039127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-4039132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-2739132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-164366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2543132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-168193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1694106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEVRGRGIAG NGGIVRPSSL PSKQVSEKMG FMKGVRGFTP PPFLMKTFQM VEDTETNNMI  60
SWNFEGTSLI ILDHLKFAAE VLPKYFKHSN LSSFIYQLNN YGFRKIGLRQ YEYENKWFQR  120
GQEHLLMNIR RRNDEDPTIR KRREPREQHV TAARPSIEAK LEIFEDHMNA LKEDITRSKY  180
HMGKLESSIA IFKKNVKKME AKSKALIKVL ARIFSPALVE KIIQRVEEEP ELEILQTMKR  240
RRVILPQSSK TTTKSMDDGA CGMDQDDQEA NTSMAESKKS ADQKLWKKFM GDDSVSEDES  300
EQQLLKQHSR IDMEFDDLMV SKIMNAKEPN LDVEDEVAVD LWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-23411323105Heat shock factor protein 2
5d8l_B2e-23411323105Heat shock factor protein 2
5d8l_D2e-23411323105Heat shock factor protein 2
5d8l_F2e-23411323105Heat shock factor protein 2
5d8l_H2e-23411323105Heat shock factor protein 2
5hdk_A2e-23411328110Heat shock factor protein 2
5hdk_B2e-23411328110Heat shock factor protein 2
5hdk_C2e-23411328110Heat shock factor protein 2
5hdk_D2e-23411328110Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238242KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027157049.10.0heat stress transcription factor A-7b-like
TrEMBLA0A068UFW70.0A0A068UFW7_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-38heat shock transcription factor A6B