PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g04470 | ||||||||
Common Name | GSCOC_T00015632001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37371.5 Da PI: 5.3626 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.2e-18 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f tae Aa+a++ +++++g Cc08_g04470 124 HYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEAAARAYDTEARRIRG 173 7********.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.171 | 124 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 124 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-22 | 124 | 183 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.46E-31 | 124 | 183 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 124 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MCGGAIISDY IQPSRSSHRL SADLLWGIGG SGDLPDSKDI KKKKNTSNFY TKQLRSEIID 60 LDDEFEADFR EFSDQAVEEL EDVKPFGFSA SKHSAILSRG TKCGNSSDSS DESGKYLKRK 120 RKNHYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEAA ARAYDTEARR IRGKKAKLNF 180 PDDTQLSASR RTVVANPQKV RVKEDQSQVQ PRSSSFGCSD FGWEEQCPKT PEISSIFSSA 240 IDWEEPQFVE DANSSKNLKT SPLDLVPADG NNKKLSEEFS AFESQMKVAQ MPYLEGNWDA 300 SLDAFLNGPA VKDGGDEMDL WTFDDISAMM GGVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 124 | 181 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF278732 | 0.0 | KF278732.1 Coffea arabica ethylene response factor 3 mRNA, partial cds. | |||
GenBank | KF743545 | 0.0 | KF743545.1 Coffea arabica ERF transcription factor 06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084800.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A068V5A0 | 0.0 | A0A068V5A0_COFCA; Uncharacterized protein | ||||
STRING | XP_009775920.1 | 1e-128 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-57 | related to AP2 12 |