PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03330
Common NameGSCOC_T00010784001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Dof
Protein Properties Length: 130aa    MW: 15070.3 Da    PI: 9.6233
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof51.61.9e-1692129239
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrry 39 
                  ke+al+ prC+stn+kfCyy ny+lsqPr fCk+ rry
  Cc08_g03330  92 KEQALNYPRCNSTNAKFCYYINYNLSQPRQFCKTYRRY 129
                  78999********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-1284129IPR003851Zinc finger, Dof-type
PfamPF027011.6E-1194129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088416.28396129IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MIVADVSGNS SQCVFVCDFE VIENSRNNAQ LRNWPFRAYP IFVRVFISCK YSMSKFIGLK  60
VVKPMEEIVV PNDNTTSCTK SGSLERKVRS QKEQALNYPR CNSTNAKFCY YINYNLSQPR  120
QFCKTYRRY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027181554.12e-30dof zinc finger protein DOF4.6 isoform X1
SwissprotQ84JQ81e-17DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLA0A068VD984e-90A0A068VD98_COFCA; Uncharacterized protein
STRINGPOPTR_0001s11130.15e-23(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.14e-20Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]