PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g03290

Common Name

GSCOC_T00010790001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 300aa MW: 33265.4 Da PI: 10.4075

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g03290	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.7	6e-29	231	281	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Cc08_g03290 231 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 281 9*************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.09E-13	228	281	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-25	229	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-21	231	282	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-6	232	281	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSGWRRTTE DMIDLGFCKR ALDSRNSSIS SSMAAKPDTS 60 NFFELSLSNN QRMISVSDHH HQPSSNNSHY NLIQNSSSTS TTNNNLIHSF QQSQQFPLHH 120 QHHLHHHHLL QHQQHQVGGG GGGLNHPEFG FLRPIRGIPV YQNPPPFPLF NPILQSLDAS 180 TTSCGIPSPT STTTSSSNPT CFQSQGGCGG GGLMRSRFSS RFPAKRSMRA PRMRWTTTLH 240 ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ VIKWTACFIK SVSFLLRRD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-14	232	280	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	232	280	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	232	280	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	232	280	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	232	280	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027085129.1	0.0	probable transcription factor KAN2 isoform X4
Swissprot	Q93WJ9	2e-36	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A068VFS9	0.0	A0A068VFS9_COFCA; Uncharacterized protein
STRING	POPTR_0001s02010.1	4e-89	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-37	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]