PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03280
Common NameGSCOC_T00010791001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 328aa    MW: 37000.2 Da    PI: 9.2361
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32150203255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cc08_g03280 150 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 203
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.52E-15147203IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28148203IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23150203IPR006447Myb domain, plants
PfamPF002492.0E-7151202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MKGERERERE RERERERERE RERERESSFQ QSQQFPLHHQ HHLHHHHLLQ HQQHQVGGGG  60
GGLNHPEFGF LRPIRGIPVY QNPPPFPLFN PILQSLDAST TSCGIPSPTS TTTSSSNPTC  120
FQSQGGCGGG GLMRSRFSSR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV  180
LELMDVKDLT LAHVKSHLQM YRTVKTTDRA APSSGQSDIY ENGSSGDNSE DLMFEVQNTR  240
KPELSVQQGR QNMQQDKDLH GLWSNSSSRE AWLHGKMRDS LGNIPSLEKD IEPKCSSYDR  300
LSDVSSSSLS ESSPKKPNLE FTLGRPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11424RERERERERER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085126.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6163e-74KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A068VDA20.0A0A068VDA2_COFCA; Uncharacterized protein
STRINGVIT_02s0012g01940.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-72G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]