PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g03110

Common Name

GSCOC_T00037821001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 324aa MW: 35610.9 Da PI: 8.0197

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g03110	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed l+d++k +G g W++ +++ g++R++k+c++rw++yl Cc08_g03110 14 KGAWSPSEDRMLIDYIKSHGQGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.4	4.5e-15	67	117	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ +W++Ia +++ gRt++++k++w++ Cc08_g03110 67 RGNITDDEEDLIIRLHKLLGNRpvhthSWSLIAGRLP-GRTDNEIKNFWNTN 117 7999*******************************.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.992	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-25	11	114	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.71E-11	16	61	No hit	No description
PROSITE profile	PS51294	15.868	66	122	IPR017930	Myb domain
SMART	SM00717	3.2E-11	66	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	67	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-21	69	121	IPR009057	Homeodomain-like
CDD	cd00167	1.28E-10	71	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGRTPCCAKE GLKKGAWSPS EDRMLIDYIK SHGQGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDDEEDLIIR LHKLLGNRPV HTHSWSLIAG RLPGRTDNEI KNFWNTNLAK 120 KIGGPQHLAA EPSSSTTRSR AAPALQNPTS THQPSNTEKL EGSPTHVVRT KARRLTKGFI 180 NPDLQTSCTQ QQPGIIMAPS GAAAKDDFSE ARTTDKSEKV GPDPASGAFS GKGGYYSSDF 240 VMDFEMDDDF LSDFLNKDFV GFEQDFPQVL ANGTCVETNG EANDFSPNCC PKPLSQVDRN 300 DHGDLGSMPT LLDTALAWLN EGH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-23	12	122	5	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084202.1	0.0	transcription factor MYB4-like
TrEMBL	A0A068UWZ1	0.0	A0A068UWZ1_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-59	myb domain protein 3