PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03080
Common NameGSCOC_T00037817001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 329aa    MW: 36754.5 Da    PI: 6.9487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++lv++++++G g+W t ++  g++R++k+c++rw +yl
      Cc08_g03080 11 KGPWSIEEDQRLVEYIEKHGQGNWQTLPKQAGLNRCGKSCRLRWTNYL 58
                     79********************************************97 PP

2Myb_DNA-binding52.89.2e-1764109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+  ++ ++kqlG++ W++Ia++++ +Rt++++k++w+++l
      Cc08_g03080  64 RGGFSAEEEAAIIALHKQLGNK-WSRIAAHLP-RRTDNEIKNFWNTHL 109
                      7889******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.035658IPR017930Myb domain
SuperFamilySSF466899.73E-318105IPR009057Homeodomain-like
SMARTSM007173.3E-141060IPR001005SANT/Myb domain
PfamPF002491.1E-161158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231265IPR009057Homeodomain-like
CDDcd001672.25E-111358No hitNo description
PROSITE profilePS5129425.74959113IPR017930Myb domain
SMARTSM007172.4E-1663111IPR001005SANT/Myb domain
PfamPF002491.1E-1464109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2666113IPR009057Homeodomain-like
CDDcd001675.58E-1367109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVRPPEKGVK KGPWSIEEDQ RLVEYIEKHG QGNWQTLPKQ AGLNRCGKSC RLRWTNYLRP  60
GIKRGGFSAE EEAAIIALHK QLGNKWSRIA AHLPRRTDNE IKNFWNTHLK KKLLRRGIDP  120
TTHKPVPDFS LLNLSQAQLL SVSDLHNFIN PLDAALNLQA NANDLIKFQL LKNMMQAINP  180
NPLPYIQGNT NLADLIQLNR LFDGTNTDFT VDPLQAQSMN TSFCNISPLL NQQQTSTSHS  240
LPCLDGQITP GPILDDGFNV SSSNMYNSEY SLPSLVSVTP ESSIINPFES FKHGSIPAEA  300
PEQSNVFDDW NSLVNDEASS LFWKDVLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-28111134105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-28111134105C-Myb DNA-Binding Domain
1msf_C4e-28111134105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082951.10.0transcription factor MYB41-like
SwissprotQ9S9Z25e-65MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A068UXM80.0A0A068UXM8_COFCA; Uncharacterized protein
STRINGVIT_02s0012g01650.t012e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-67myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]