PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g03080 | ||||||||
Common Name | GSCOC_T00037817001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36754.5 Da PI: 6.9487 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++lv++++++G g+W t ++ g++R++k+c++rw +yl Cc08_g03080 11 KGPWSIEEDQRLVEYIEKHGQGNWQTLPKQAGLNRCGKSCRLRWTNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.2e-17 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+ ++ ++kqlG++ W++Ia++++ +Rt++++k++w+++l Cc08_g03080 64 RGGFSAEEEAAIIALHKQLGNK-WSRIAAHLP-RRTDNEIKNFWNTHL 109 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.035 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-31 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-11 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.749 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 64 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 66 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-13 | 67 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MVRPPEKGVK KGPWSIEEDQ RLVEYIEKHG QGNWQTLPKQ AGLNRCGKSC RLRWTNYLRP 60 GIKRGGFSAE EEAAIIALHK QLGNKWSRIA AHLPRRTDNE IKNFWNTHLK KKLLRRGIDP 120 TTHKPVPDFS LLNLSQAQLL SVSDLHNFIN PLDAALNLQA NANDLIKFQL LKNMMQAINP 180 NPLPYIQGNT NLADLIQLNR LFDGTNTDFT VDPLQAQSMN TSFCNISPLL NQQQTSTSHS 240 LPCLDGQITP GPILDDGFNV SSSNMYNSEY SLPSLVSVTP ESSIINPFES FKHGSIPAEA 300 PEQSNVFDDW NSLVNDEASS LFWKDVLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 11 | 113 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027082951.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9S9Z2 | 5e-65 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A068UXM8 | 0.0 | A0A068UXM8_COFCA; Uncharacterized protein | ||||
STRING | VIT_02s0012g01650.t01 | 2e-92 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-67 | myb domain protein 9 |
Publications ? help Back to Top | |||
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