PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03070
Common NameGSCOC_T00037816001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 304aa    MW: 34006.4 Da    PI: 7.1968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l+++++++G g+W t ++  g++R++k+c++rw +yl
      Cc08_g03070 11 KGPWSIEEDKKLIEYIEKHGQGNWQTLPKQAGLNRCGKSCRLRWTNYL 58
                     79********************************************97 PP
2Myb_DNA-binding48.22.6e-1564109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++e++  +  ++kqlG++ W++Ia++++ +Rt++++k++w+++l
      Cc08_g03070  64 RGGFSAEDEATITALHKQLGNK-WSRIAAHLP-RRTDNEIKNFWNTHL 109
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-24661IPR009057Homeodomain-like
PROSITE profilePS5129424.476662IPR017930Myb domain
SuperFamilySSF466895.24E-308105IPR009057Homeodomain-like
SMARTSM007171.4E-141060IPR001005SANT/Myb domain
PfamPF002498.2E-171158IPR001005SANT/Myb domain
CDDcd001679.01E-121358No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2562113IPR009057Homeodomain-like
SMARTSM007171.6E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129418.88963113IPR017930Myb domain
PfamPF002493.8E-1364109IPR001005SANT/Myb domain
CDDcd001676.54E-1167109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MARSPENGVK KGPWSIEEDK KLIEYIEKHG QGNWQTLPKQ AGLNRCGKSC RLRWTNYLRP  60
GIKRGGFSAE DEATITALHK QLGNKWSRIA AHLPRRTDNE IKNFWNTHLK KKLLRKGIDP  120
TTHKPIPDFN LLNLSRTQLS SVSNLYNVIS PLDTALNFQA SANDLIKFQL LQNMMQAINP  180
NPLPYVQGNT NLADLIQLNW IFNGANTDFT TSTSHSLQCS DGEMIPGPIR DDNVKVPSNV  240
YNSEYSLPSL FSVTPESSVV NPLENFMHTS ILAEAPEQSN VFDALESLVD DEASSSFWKD  300
ILG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261111327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082952.10.0transcription factor MYB41-like
SwissprotQ9S9Z29e-68MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A068UXA50.0A0A068UXA5_COFCA; Uncharacterized protein
STRINGVIT_02s0012g01650.t011e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-74myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]