PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03040
Common NameGSCOC_T00037812001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 314aa    MW: 35306.6 Da    PI: 6.7871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding66.64.5e-211562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde+l+++v+ +G gtWk+ +++ g++R++k+c++rw++yl
      Cc08_g03040 15 RGPWTDEEDEKLINYVQNYGHGTWKSLPKKAGLNRCGKSCRLRWNNYL 62
                     89*********************************************7 PP
2Myb_DNA-binding54.42.9e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++ +Ed l+v+++  lG++ W++Ia++++ gRt++++k++w++
      Cc08_g03040  68 RGMFSDQEDRLIVELHSILGNK-WSKIAAHLP-GRTDNEIKNHWNT 111
                      7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-26765IPR009057Homeodomain-like
PROSITE profilePS5129419.9161062IPR017930Myb domain
SuperFamilySSF466891.4E-3112109IPR009057Homeodomain-like
SMARTSM007171.2E-151464IPR001005SANT/Myb domain
PfamPF002491.7E-181562IPR001005SANT/Myb domain
CDDcd001671.91E-121762No hitNo description
PROSITE profilePS5129427.75663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2566117IPR009057Homeodomain-like
SMARTSM007171.3E-1567115IPR001005SANT/Myb domain
PfamPF002491.7E-1568111IPR001005SANT/Myb domain
CDDcd001671.69E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVRSPCCETN NGLKRGPWTD EEDEKLINYV QNYGHGTWKS LPKKAGLNRC GKSCRLRWNN  60
YLRPDIKRGM FSDQEDRLIV ELHSILGNKW SKIAAHLPGR TDNEIKNHWN TKLRRKLLQL  120
GIDPQTHKPV VPDINQIVDF SRFLSAFNPA SNLMNVWTNV LLSQVDATQL AKFQLLQKLL  180
KTVNPGPAQN NLVSSTRFIN ADGAQVNTDF ILPTLQSSNF DPTFPDNNYG LSNAVTFSAQ  240
NDKTNSLSST TSTSTQTNNY LPSVVEATRA HVSSSVDQVN PPQDPLMTSS IIDTFDSWEE  300
LMDNEPFWED ILA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085062.10.0transcription factor MYB41-like
TrEMBLA0A068UZI30.0A0A068UZI3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-74myb domain protein 9