PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g00950
Common NameGSCOC_T00038447001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 364aa    MW: 41204.2 Da    PI: 4.8049
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g00950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.82.8e-11296344553
                  SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                   +++k ql++Le+++++++ ps +++  + + ++L++++V  WF  +Ra
  Cc08_g00950 296 KRIKKAQLDTLERVYNRTKRPSNAMISNIVHLTNLPKKRVVKWFEDKRA 344
                  5699********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.122289349IPR001356Homeobox domain
SuperFamilySSF466893.46E-10291356IPR009057Homeodomain-like
SMARTSM003899.6E-8291353IPR001356Homeobox domain
CDDcd000861.11E-8292344No hitNo description
Gene3DG3DSA:1.10.10.604.1E-10295344IPR009057Homeodomain-like
PfamPF000465.7E-9296344IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGTSTAAWLP HMSSFVALKP HCCLDKKPLF VDTKSIRTSF ILPRQSFSSS SILTFARRRG  60
GHQASSSPVK SKKQKKKEQT FGSKSTQEDE DDDAFEALFR QLEEDLKNDN LSSENGDDDD  120
EISEEDLAKL ERELEEALKD DELFGALDLV GDGKTEDESD EDEKEEDNED DNTANYHVED  180
LEDDDNDEEM PVKLKNWQLK RLAYALKNGR RKTNIKSLAA DLCLDRAVVL ELLRDPPPDL  240
LMMSAALPDK PVSTVVEPVN KLKEACPLEM TPVTTKAEAE VKVPVHVMQS NWSAKKRIKK  300
AQLDTLERVY NRTKRPSNAM ISNIVHLTNL PKKRVVKWFE DKRAEDGIPE HRLPYERSAS  360
TFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183508.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A068V0R60.0A0A068V0R6_COFCA; Uncharacterized protein
STRINGSolyc08g061140.2.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.15e-56overexpressor of cationic peroxidase 3