PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g00210
Common NameGSCOC_T00005577001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 382aa    MW: 42730.8 Da    PI: 6.5928
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g00210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-083303632154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Cc08_g00210 330 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363
                  469*****************************87 PP
2ELK292.4e-10284305122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Cc08_g00210 284 ELKHELKQGYKEKIVDIREEIL 305
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-18114158IPR005540KNOX1
PfamPF037903.1E-17116157IPR005540KNOX1
SMARTSM012562.1E-25172227IPR005541KNOX2
PfamPF037912.4E-19177226IPR005541KNOX2
PROSITE profilePS512139.969284304IPR005539ELK domain
PfamPF037898.7E-7284305IPR005539ELK domain
SMARTSM011886.1E-4284305IPR005539ELK domain
PROSITE profilePS5007111.742304367IPR001356Homeobox domain
SMARTSM003895.4E-11306371IPR001356Homeobox domain
SuperFamilySSF466893.72E-16306369IPR009057Homeodomain-like
CDDcd000861.06E-11307368No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25311368IPR009057Homeodomain-like
PfamPF059201.0E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAFPDHHLSP EMLNLRHFSD QQQHLPQSTP ETKPPPPPPT WLNSSHFTSA PPPHDSNFLN  60
LHSNSDSNSD SILTPAPLHA PHTNPNPTPS TTTTNTAPVP DLTHTTTTLN WQNAGYKAQI  120
LGHPLYQQLL SAHVACLRIA TPVDQLPRID AQLAQSQQVV TKYSALGGVG HANLGPEDHK  180
DLDQFMTHYV LLLCSFKEQL QQHVRIHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD  240
DEDDQVDSDG NLFDGSLDGP DGMGFGPLIP TESERSLMER VRQELKHELK QGYKEKIVDI  300
REEILRKRRA GKLPGDTTSV LKDWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  360
RKRNWHSNPS PSTALKSKRK R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360380RKRNWHSNPSPSTALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084219.10.0homeobox protein knotted-1-like 2
SwissprotP480001e-175KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A068VDJ30.0A0A068VDJ3_COFCA; Uncharacterized protein
STRINGVIT_04s0008g06130.t010.0(Vitis vinifera)
STRINGPGSC0003DMT4000403510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-166KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]