PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g21320

Common Name

GSCOC_T00011172001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 611aa MW: 69088.6 Da PI: 6.6653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g21320	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2.1e-20	113	204	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA +GFsvrk k+++ + ++++ + ++Cskeg + +e++ +++ ++++ etrtgCka++ + +g+w+v k+++eHnHe+a Cc07_g21320 113 LYCDYAFAMGFSVRKGKQYYFEGTKRVRAKMYCCSKEGLAISEREGgnggSNSCNNNKLETRTGCKAMIYFVCN-KGEWKVGKFVKEHNHEMA 204 7************************************999888888988899999*********9999.9*************96 PP
2	FAR1	65.2	1.7e-20	300	385	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+ +GFsvrk k+++ +++i ++ ++Cskeg +e+ + + +++ rtgCka++ + ++ g+w+vtk+++eHnH++a Cc07_g21320 300 VYCDYAHVMGFSVRKGKQYYFPGTKRIRSKSYYCSKEGCVNEDISV---ATHNKLDARTGCKAMICFTCDEGGQWKVTKFVKEHNHKMA 385 7*************************************999877...89999******************************986 PP
3	FAR1	45.7	2.1e-14	454	542	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY eYA++vGF + + + s ++g+ + ++ C++ + +++ + + ++++ + C+a+++vk +k+g+w+vt++ +H+H+l+ Cc07_g21320 454 FYGEYARDVGFVMDVMLNCPSVMEGSSIAHHSGCNEGDFCANKYNPLRLVVNQHPGSGARCQAMMTVKSDKSGNWVVTRFLRDHSHPLV 542 9***************************************999999999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-17	113	204	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.9E-18	300	385	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.8E-12	454	542	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MLLQVLETLG KISEILRHLF IAHCYRCIGW RNSISCATHL VTGMIDSRKR RRKSEDSNAV 60 RVDSAEEEEE VKVVCFGCCG EEAINYKRKS YIEALENLLS EKVLNCEEEA YKLYCDYAFA 120 MGFSVRKGKQ YYFEGTKRVR AKMYCCSKEG LAISEREGGN GGSNSCNNNK LETRTGCKAM 180 IYFVCNKGEW KVGKFVKEHN HEMAEVCERP LLRSARAALA SNYGGMQPKL SDMSSPCCEV 240 EKPEDVIDLD SDEEDVMCLR CNGAEGEAEA CECSSNTGVD DLEKILVEQV VQNEEEAYKV 300 YCDYAHVMGF SVRKGKQYYF PGTKRIRSKS YYCSKEGCVN EDISVATHNK LDARTGCKAM 360 ICFTCDEGGQ WKVTKFVKEH NHKMAEPYER HLLRSARSVS DAKGSTASQS MKLGLNNVTC 420 SIECSGSESI GHENSIKEPH EGMMFETEDA ARAFYGEYAR DVGFVMDVML NCPSVMEGSS 480 IAHHSGCNEG DFCANKYNPL RLVVNQHPGS GARCQAMMTV KSDKSGNWVV TRFLRDHSHP 540 LVIFPREVSY CMDDKDKKIQ ELTSELRNKR RLCTMYQEQL MLFMREVEEH INQLSRKTEL 600 VVKNLNKLDC *

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MLLQVLETLG KISEILRHLF IAHCYRCIGW RNSISCATHL VTGMIDSRKR RRKSEDSNAV  60
RVDSAEEEEE VKVVCFGCCG EEAINYKRKS YIEALENLLS EKVLNCEEEA YKLYCDYAFA  120
MGFSVRKGKQ YYFEGTKRVR AKMYCCSKEG LAISEREGGN GGSNSCNNNK LETRTGCKAM  180
IYFVCNKGEW KVGKFVKEHN HEMAEVCERP LLRSARAALA SNYGGMQPKL SDMSSPCCEV  240
EKPEDVIDLD SDEEDVMCLR CNGAEGEAEA CECSSNTGVD DLEKILVEQV VQNEEEAYKV  300
YCDYAHVMGF SVRKGKQYYF PGTKRIRSKS YYCSKEGCVN EDISVATHNK LDARTGCKAM  360
ICFTCDEGGQ WKVTKFVKEH NHKMAEPYER HLLRSARSVS DAKGSTASQS MKLGLNNVTC  420
SIECSGSESI GHENSIKEPH EGMMFETEDA ARAFYGEYAR DVGFVMDVML NCPSVMEGSS  480
IAHHSGCNEG DFCANKYNPL RLVVNQHPGS GARCQAMMTV KSDKSGNWVV TRFLRDHSHP  540
LVIFPREVSY CMDDKDKKIQ ELTSELRNKR RLCTMYQEQL MLFMREVEEH INQLSRKTEL  600
VVKNLNKLDC *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	51	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027164403.1	0.0	protein FAR1-RELATED SEQUENCE 12-like isoform X3
TrEMBL	A0A068V922	0.0	A0A068V922_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14517	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	5e-52	FAR1 family protein