PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g20810 | ||||||||
Common Name | GSCOC_T00027275001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22313.5 Da PI: 6.3636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.8 | 1.1e-12 | 38 | 84 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 +++GVr+++ g+WvAeIr p + ++ +lg+f +aeeAa+a ++ + Cc07_g20810 38 HFRGVRQRS-EGKWVAEIRNP-----HlgRTDWLGTFTSAEEAARAFDRKCIQ 84 69****999.7*********8.....667*****************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.55E-17 | 38 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-25 | 38 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.62E-22 | 38 | 97 | No hit | No description |
SMART | SM00380 | 3.3E-25 | 38 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.729 | 38 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-7 | 38 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MMEDKDHDQS RSNDKKQKQK KKKKNRDREV DGEKRVVHFR GVRQRSEGKW VAEIRNPHLG 60 RTDWLGTFTS AEEAARAFDR KCIQYKGDRA KTNFPSSDYA NANDDQSSSL QQQQQQQHAL 120 PPPAAAPPLS VNAPVGHASP LLTNTAVAGA TATNSTATAA DPGGTSWEED EDLWDVFFRG 180 DQIFSDIDWM MFDSSPPLGP * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075916.1 | 1e-107 | ethylene-responsive transcription factor ERF038-like | ||||
TrEMBL | A0A068UIW0 | 1e-147 | A0A068UIW0_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 3e-19 | related to AP2 6l |