PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g19830 | ||||||||
Common Name | GSCOC_T00033881001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Nin-like | ||||||||
Protein Properties | Length: 176aa MW: 20397.6 Da PI: 9.655 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 62.3 | 8.2e-20 | 14 | 61 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ Cc07_g19830 14 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIRRWPPRKERKV 61 899*****************************************7775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.481 | 1 | 81 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-16 | 14 | 61 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-4 | 20 | 51 | IPR009057 | Homeodomain-like |
SuperFamily | SSF54277 | 2.55E-16 | 91 | 174 | No hit | No description |
SMART | SM00666 | 4.8E-12 | 95 | 175 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 15.396 | 95 | 175 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.6E-15 | 98 | 174 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.6E-16 | 98 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MQEPSCTLKS DLGITREVLE QNSTRKLEDA AKNIGVSRST LKRICREYGI RRWPPRKERK 60 VSQVFVKQKV VHPPTENIEE HHRLYATRLE DDGSMWVIKA KYQEDKIKFE LSSSASKIDL 120 EKKIAQRLNL SLGSFKIKYQ DELNDWILIT CDTDLSFCMK TLHKLGRTTI EMLVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074250.1 | 1e-119 | protein NLP6-like | ||||
TrEMBL | A0A068UT07 | 1e-126 | A0A068UT07_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4897 | 4 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 8e-16 | Nin-like family protein |