PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g19520

Common Name

GSCOC_T00018562001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 274aa MW: 28300.7 Da PI: 10.1452

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g19520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.3e-39	34	135	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaaks 97 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s ++s+++ s++ ++k+ Cc07_g19520 34 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSPASARNSVGTLSAP----LDHKP 127 789*************************************************************9999988877777777777744444....33333 PP TCP 98 kksqksaa 105 ++q++++ Cc07_g19520 128 PSQQHQQQ 135 33333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-33	40	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	40	94	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSASADGNG NGNGAIIDPS QRVTSSNNGS AALAVKKPPA KDRHSKVDGR GRRIRMPIIC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTVSPA SARNSVGTLS 120 APLDHKPPSQ QHQQQPLIAP TPFILGKRLR SSNEDDSINE KDDASAAAAA ATVVGSAALG 180 GGFWALPARP DLGQVWSFAA AAAQPEMVVP TLNAPQQSGM ARFLQQSTSM GEASAARVGN 240 YLPIAHQGHL NLLASLSGPP PPPSSEQREG DAR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075523.1	0.0	transcription factor TCP7-like
Swissprot	Q9FMX2	5e-80	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A068U7Q1	0.0	A0A068U7Q1_COFCA; Uncharacterized protein
STRING	Solyc04g009180.1.1	3e-99	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-57	TCP family protein