PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g18210
Common NameGSCOC_T00018782001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 409aa    MW: 45508.2 Da    PI: 5.2557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g18210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-091759445
                     S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45
                     WT eEd+ + +a + +  +   W++Ia+ ++ gRt +++k ++ 
      Cc07_g18210 17 WTREEDKAFENALAIYLDDsnLWEKIAAVVP-GRTVEEIKMHYE 59
                     ****************99999**********.**********96 PP
2Myb_DNA-binding39.31.5e-12105150247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        W++eE+ l++++  ++G g+W+ I+r     Rt+ q+ s+ qky
      Cc07_g18210 105 ATWSEEEHRLFLQGLDKYGRGDWRNISRLCVRSRTPTQVASHAQKY 150
                      57**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-6761IPR009057Homeodomain-like
PROSITE profilePS512939.1671266IPR017884SANT domain
SMARTSM007171.1E-71364IPR001005SANT/Myb domain
SuperFamilySSF466892.14E-101568IPR009057Homeodomain-like
PfamPF002495.6E-71759IPR001005SANT/Myb domain
CDDcd001673.00E-101762No hitNo description
PROSITE profilePS5129419.16499155IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-11103153IPR009057Homeodomain-like
SuperFamilySSF466891.42E-15103153IPR009057Homeodomain-like
SMARTSM007173.3E-11103153IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-16103153IPR006447Myb domain, plants
PfamPF002492.2E-10105150IPR001005SANT/Myb domain
CDDcd001671.33E-10106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVCNQKMDSR TCSNSIWTRE EDKAFENALA IYLDDSNLWE KIAAVVPGRT VEEIKMHYEV  60
LVADVNAIEL GLVPFPHYVD SFKKSRKLVG HAAIDRKGKQ YCKRATWSEE EHRLFLQGLD  120
KYGRGDWRNI SRLCVRSRTP TQVASHAQKY FKRTVVVDKR TRSSIHDVTI LDNGKIVTQQ  180
VQTTQLIFRA SGNYVMDTGL YQSVNNRVSG GYLHGSLIDS QCNMFSHVLS TKDISTGIDL  240
LESLLDSLAD APTPQEPSSQ KISEFTSASL CTPVNANQHM PTNGEVVIED TITPADLEIF  300
NSLFIFQHDM SNSQGPIIGE VIGTAESPQM LNFEASPFSV HHDFGVHAPL TASQPTLDPL  360
LSDRIRGLFP YPGSSMFEMD FSDFATFFCD EPDEVAAPTY PAPLSGQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-16778173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068U8C90.0A0A068U8C9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1932323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-50MYB family protein