PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g17440
Common NameGSCOC_T00037431001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 492aa    MW: 55552.2 Da    PI: 4.5281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g17440genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.98.3e-761164752373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  ++lLl  Aea+++g+ + a+ +  rl+++ s +    +p+ Rla yft++L  + +   +el    p  +   + ++++++a+++++e+sP++kf+h+
  Cc07_g17440 116 TDLLLMGAEAIEAGNVRFASLVALRLKDILSDQEngdNPLDRLALYFTQGLLDKSLT-APEL----PEDPV--SPQTNAISAFQMLQELSPYVKFAHF 206
                  689999*********************99555442257************9877666.2333....33333..337789******************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaIlea+eg++++H+iDfd+++G+QWp+L+  La+R++   slRiT+++  ++ s+ ++++tg rL++fA++++++f+f+ +++++ ed+  ee+
  Cc07_g17440 207 TANQAILEATEGHQEIHVIDFDVMEGIQWPSLMVDLAAREDA--SLRITAIAG-DKRSSCNIQQTGFRLQDFANSINLSFSFDQVLVTKEEDF--EEI 299
                  ***************************************765..9*******9.67899*************************866655555..777 PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvEr 287
                    k g +l+ n++++  +++ ++ sl +   ++ + +++lsPk++v+v++e    ++  s+sF+e f+eal++y+al+dsl +++ +    + + +E+
  Cc07_g17440 300 --KVGHTLIANCMINQLHMPYRESSLVK---TFFNGLRKLSPKILVLVQEElfsfSKAPSTSFAEFFCEALDHYTALYDSLRSGFCAGYkLALKIIEK 392
                  ..5699**************99999999...********************7664455777********************666655553888999** PP

         GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  e+l+ +i + v +     ++ +e  +   +  ++ GF+p+p s+ +++qak+l++ ++  gy v++e+  l+l+Wk+rpL+++S W
  Cc07_g17440 393 EFLRMRILDSVKHFPCG-IMGNE-SNMLPDYPSMNGFRPIPTSSCNVTQAKHLISLFN-GGYWVQNEQCKLTLCWKSRPLTTASIW 475
                  ***********998887.44444.45556777899***********************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.32989457IPR005202Transcription factor GRAS
PfamPF035142.8E-73116475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEFEKMYFDV EPSYIIDHHC SLETALTFPN NHLIPPYSFQ DYVSNDIVST ENFLEMETDI  60
KDFDFMAKNC ALDHENVVHK RLLPCQEIQE TMDILAAEQS HLKDIQDELM EESSLTDLLL  120
MGAEAIEAGN VRFASLVALR LKDILSDQEN GDNPLDRLAL YFTQGLLDKS LTAPELPEDP  180
VSPQTNAISA FQMLQELSPY VKFAHFTANQ AILEATEGHQ EIHVIDFDVM EGIQWPSLMV  240
DLAAREDASL RITAIAGDKR SSCNIQQTGF RLQDFANSIN LSFSFDQVLV TKEEDFEEIK  300
VGHTLIANCM INQLHMPYRE SSLVKTFFNG LRKLSPKILV LVQEELFSFS KAPSTSFAEF  360
FCEALDHYTA LYDSLRSGFC AGYKLALKII EKEFLRMRIL DSVKHFPCGI MGNESNMLPD  420
YPSMNGFRPI PTSSCNVTQA KHLISLFNGG YWVQNEQCKL TLCWKSRPLT TASIWVPTAS  480
SNTSLARSTS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3412347727380Protein SCARECROW
5b3h_A2e-3412347726379Protein SCARECROW
5b3h_D2e-3412347726379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075779.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A068UWK30.0A0A068UWK3_COFCA; Uncharacterized protein
STRINGXP_009606529.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-57GRAS family protein