PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g16730
Common NameGSCOC_T00037525001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 406aa    MW: 43068.5 Da    PI: 6.2608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g16730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20181230255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  Cc07_g16730 181 RYRGVRRRP-WGKWAAEIRDPY----KaARVWLGTFDTAEAAARAYDEAALRFRG 230
                  7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.9E-36181244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32181239IPR001471AP2/ERF domain
PROSITE profilePS5103225.989181238IPR001471AP2/ERF domain
PfamPF008479.9E-14181230IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22181239IPR016177DNA-binding domain
PRINTSPR003671.4E-11182193IPR001471AP2/ERF domain
CDDcd000184.00E-15189240No hitNo description
PRINTSPR003671.4E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MCVFEVANSG KRARGENRGG DGEKSLLESL VSPMLSGFDR EQENSAIVSA LARVVAGEAE  60
DIDQELVVMN QGDGGGVVGG YYGAAASSNG DSSSPSACSS WGGGVGEKRG RPELNPDVGL  120
SESVSAVCWA FNDRPPVGSN LGSGVESSLM RTSMAATGAT YTYAATSTNS TEPYTGEPKR  180
RYRGVRRRPW GKWAAEIRDP YKAARVWLGT FDTAEAAARA YDEAALRFRG NKAKLNFPEN  240
VTLLPSSASS ASSSSSLSSS QLMVSDSPNA LFSIISSSEP IVHTRQVLHH MQNPAYSANF  300
LNSNAAQNQM SFINPSHFLP RQPTSLLDQF LLPSSSTGST FQSTSSSFPP YTISAPAPSP  360
QTPAYPLFLP VQRPPVLKPS SRSENTADFP MNSWSDSGHH QSSSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22180241163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074363.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A068UX310.0A0A068UX31_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-16ERF family protein