PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g16570
Common NameGSCOC_T00037545001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 218aa    MW: 24867.9 Da    PI: 9.1632
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g16570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32140198159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Cc07_g16570 140 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 198
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-34125198IPR003657WRKY domain
SuperFamilySSF1182901.02E-28133199IPR003657WRKY domain
PROSITE profilePS5081129.459135200IPR003657WRKY domain
SMARTSM007746.1E-37140199IPR003657WRKY domain
PfamPF031062.7E-25141197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLNQSLFEDQ DMSSQLGFFA FSSNPYNLPF GCSQPSLKTL TAVAGSLAAD TQTTLSESAT  60
QKQKEDVTSH FGEPPQLRSL QRSNANLWAW GEVNDCMNSK KNGGDNYLGV ATIKMKKIKA  120
RRKVREPRFC FKTLSEVDVL DDGYKWRKYG QKVVKNTQHP RSYYRCTQDN CRVKKRVERL  180
AEDPRMVITT YEGRHIHSPS QDEDDSQASS QMNNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27131197874Probable WRKY transcription factor 4
2lex_A1e-27131197874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074070.11e-166probable WRKY transcription factor 57
RefseqXP_027077802.11e-166probable WRKY transcription factor 57
RefseqXP_027179733.11e-166probable WRKY transcription factor 57
SwissprotQ9SVB73e-61WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A068UYZ81e-164A0A068UYZ8_COFCA; Uncharacterized protein
STRINGVIT_07s0031g01840.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-58WRKY DNA-binding protein 13