PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g16000
Common NameGSCOC_T00037621001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 238aa    MW: 26213.2 Da    PI: 6.5984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g16000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-192777256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g+
  Cc07_g16000 27 KFLGVRRRP-WGRFAAEIRDPTT---KERHWLGTFDTAEEAALAYDKAARSMRGA 77
                 678******.**********965...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7452784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-292784IPR001471AP2/ERF domain
SMARTSM003803.3E-332790IPR001471AP2/ERF domain
CDDcd000184.05E-302783No hitNo description
SuperFamilySSF541718.5E-212785IPR016177DNA-binding domain
PfamPF008475.6E-122876IPR001471AP2/ERF domain
PRINTSPR003673.2E-82839IPR001471AP2/ERF domain
PRINTSPR003673.2E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSSSSGKKK QQAQVKMQQE TGGDAVKFLG VRRRPWGRFA AEIRDPTTKE RHWLGTFDTA  60
EEAALAYDKA ARSMRGARAR TNFVYSDMPP GSSVTAIICP EETIAPNHRS IQNNLRAEGI  120
LHHFDSSHHY SNSTGDAGGS EQLPALPSAF SSEVWAEPST RLCGTYTDEP TTEPASSYCQ  180
KHPGLGFDST IFVHSPLFSQ MPPVSDSESF EPLHLPSSYY FCFFFFFFLS RDGGIPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-192883359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076841.19e-76ethylene-responsive transcription factor ABI4-like
RefseqXP_027177683.19e-76ethylene-responsive transcription factor ABI4-like
SwissprotQ9M6441e-50LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A068UWK51e-176A0A068UWK5_COFCA; Uncharacterized protein
STRINGXP_010028918.14e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-40ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]