PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15720
Common NameGSCOC_T00036439001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 286aa    MW: 31950.6 Da    PI: 9.3688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15720genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13101147354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  + h  +Er+RR+++ s ++ L  ++P +     kKl+Ka++L  Av++Ik+L
  Cc07_g15720 101 QDHILAERKRRQKLSSHIAALSAVVPDL-----KKLDKASVLGGAVKHIKQL 147
                  67999***********************.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.92698147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10101147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-14102164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.4E-14102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-11103152No hitNo description
SMARTSM003536.4E-12104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAKNSAKLAF LECERPPYEI PHQNHPFCRI FLNFITNWEI SPCNYPKHTV KTKSDKMMHL  60
GTAYYSYISP NSFNQEPSEA LEYGVSSPFE KGFSGTPVRA QDHILAERKR RQKLSSHIAA  120
LSAVVPDLKK LDKASVLGGA VKHIKQLDKR VKFFEKEEKK RNQLEELLAS AMKKPRPNND  180
NSSSSAENVS NNSSCDHHSS SSVEVQVTSS GGDMLIKIEC KNHEGILLGF SSLMKRIHLN  240
ITSSSFMQFG HGMLFIGAVA QVDEKFCVTA EFLANSIRQA LLKLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177604.11e-163transcription factor bHLH18-like
TrEMBLA0A068TZA80.0A0A068TZA8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-23bHLH family protein