PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g15700 | ||||||||
Common Name | GSCOC_T00036441001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35426.7 Da PI: 5.5452 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l+ + G +W+++++ g+ R++k+c++rw +yl Cc07_g15700 14 RGPWSADEDMKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.8e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d++ qlG++ W++Ia++++ gRt++++k++w+++ Cc07_g15700 70 LSEHEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 5899***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.727 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.63E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.809 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGRRPCCDKV GLTRGPWSAD EDMKLISFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLMNMG 120 IDPVTHKPLP QSTSSTEQPQ EEQPKNHPDS DQEPKKEPAS SVNKSISIPQ CQIDSSSVEF 180 NNVFSIDEVP MIEPDEIFIP FAKASSTLSS TSSSSCSSFD RNSSNCNVFG YHQEFFPTIN 240 HSQSSFDHYP TDKMIVDFWD DDFISNLDML TNDDSDRNNL AAVIGLEPSP AQYHVEMVLL 300 DEDYSWKFDH F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075728.1 | 0.0 | transcription factor MYB20-like | ||||
Swissprot | Q9C7U7 | 1e-90 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A068TZN0 | 0.0 | A0A068TZN0_COFCA; Uncharacterized protein | ||||
STRING | GLYMA14G39530.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 2e-92 | myb domain protein 20 |
Publications ? help Back to Top | |||
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