PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15450
Common NameGSCOC_T00036474001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family EIL
Protein Properties Length: 366aa    MW: 41141.8 Da    PI: 5.7959
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3348.81.2e-106128049353
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHH CS
         EIN3  49 msraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgS 146
                  msraQD+iLk M+k+mevcnaqGfvYgi+pekgk ++g+sdsLr+WWk kv+fd+ +p+ai++  + ++i++g     ++++s    l+ ++DT lgS
  Cc07_g15450   1 MSRAQDSILKSMVKIMEVCNAQGFVYGIVPEKGKAMTGSSDSLREWWKGKVKFDQMAPVAIAEFLP-KIIQEG-G---VDPNSLLYLLQGIPDTILGS 93 
                  9*************************************************************9944.455442.2...35899*************** PP

                  HHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHH CS
         EIN3 147 LLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesf 244
                  LLsalmqhc ppqrrfple+g++pPWWPtGkelwwg +g++++qg+ppykkphdlkkawkvsvL++vikhm+p+++++r+l+rqsk+lqdkm+a ++ 
  Cc07_g15450  94 LLSALMQHCAPPQRRFPLENGLPPPWWPTGKELWWGDQGMAQEQGAPPYKKPHDLKKAWKVSVLASVIKHMAPDFNRLRRLVRQSKCLQDKMTAGDTS 191
                  ************************************************************************************************** PP

                  HHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXX CS
         EIN3 245 allsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgseteli 342
                  ++++++ qee++           +  ++++++s ++++d+e++ke+  +        a++++ +krk    e + + ++     cq+s +++s+ + +
  Cc07_g15450 192 TWSRIVDQEEALS----------KLTEKALKISPSEQDDQEKEKEEGLN-------LASVAASEKRK-CMFECEVILDS--LLACQNSDCPQSNLSSG 269
                  *********9854..........23678899999988888877777733.......24677788888.56666666666..68*************** PP

                  XXXXXXXXXXX CS
         EIN3 343 fadknsisqne 353
                  f+dkns+s++e
  Cc07_g15450 270 FSDKNSRSEHE 280
                  ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.8E-991201No hitNo description
Gene3DG3DSA:1.10.3180.103.2E-6479206IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.7E-5781203IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSRAQDSILK SMVKIMEVCN AQGFVYGIVP EKGKAMTGSS DSLREWWKGK VKFDQMAPVA  60
IAEFLPKIIQ EGGVDPNSLL YLLQGIPDTI LGSLLSALMQ HCAPPQRRFP LENGLPPPWW  120
PTGKELWWGD QGMAQEQGAP PYKKPHDLKK AWKVSVLASV IKHMAPDFNR LRRLVRQSKC  180
LQDKMTAGDT STWSRIVDQE EALSKLTEKA LKISPSEQDD QEKEKEEGLN LASVAASEKR  240
KCMFECEVIL DSLLACQNSD CPQSNLSSGF SDKNSRSEHE KTCIYRKSDG EKNDADIKSQ  300
ESNSFPVGLS IHHQPFPEGQ VLFTADQVMV NDDHHGVTSQ HDWMDTYHDE IGQLPWIMMH  360
METWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-58812054128Protein ETHYLENE INSENSITIVE 3
4zds_B3e-58812054128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075715.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-114EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A068TZQ90.0A0A068TZQ9_COFCA; Uncharacterized protein
STRINGGorai.003G043500.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-113EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]