PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15390
Common NameGSCOC_T00036481001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 387aa    MW: 42845.4 Da    PI: 4.904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.8e-21193243256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Cc07_g15390 193 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 243
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.10E-34192252No hitNo description
PROSITE profilePS5103223.235193250IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-23193251IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-32193251IPR001471AP2/ERF domain
SMARTSM003803.1E-38193256IPR001471AP2/ERF domain
PfamPF008472.0E-14194243IPR001471AP2/ERF domain
PRINTSPR003673.9E-11194205IPR001471AP2/ERF domain
PRINTSPR003673.9E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MATAIDIYSY SNPVFSLSSD PLREELMKAL EPFMKGASSL PSSPTTTSSP FSSSSSSLSP  60
PSTSSSSSCS SYYPFDSSSF SSEPNMYSSF TSYVPTTAHM FSQGLSSFDE MGFDEQSGGG  120
SIGLNHLTPY QILQVEAQIK LQNQQQQYLA AQSLQNYSST RQLQHQNHSP LSFLGPKPVQ  180
MKQVGTPPKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL  240
RGEFARLNFP NLRHQLSQDF GDFKPLHSSV DAKLEAICQS LADSQKQGNT GEQHQKKVGV  300
QTIPKVENTF DDSLNSEYVY PGNEDVKVEE TSSSLSPSRS DETSSLEMSS PESEITFLDF  360
AEPTFDESEN FLLQKFPSVE IDWAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22192250160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7435410.0KF743541.1 Coffea arabica ERF transcription factor 02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075221.10.0ethylene-responsive transcription factor ERF056-like
TrEMBLA0A068TYQ70.0A0A068TYQ7_COFCA; Uncharacterized protein
STRINGVIT_00s0662g00040.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-57related to AP2 4