PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15050
Common NameGSCOC_T00036526001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 346aa    MW: 38294.6 Da    PI: 6.7861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l ++++++G g+W++ ++  g++R++k+c++rw +yl
      Cc07_g15050 14 KGPWTAEEDEKLTKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.56.3e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W+tIa +++ gRt++++k++w+++l
      Cc07_g15050  67 RGKFSPEEEQTILNLHSVLGNK-WSTIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.077961IPR017930Myb domain
SuperFamilySSF466892.4E-3211108IPR009057Homeodomain-like
SMARTSM007171.0E-151363IPR001005SANT/Myb domain
PfamPF002494.3E-171461IPR001005SANT/Myb domain
CDDcd001672.15E-121661No hitNo description
PROSITE profilePS5129427.37662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2865117IPR009057Homeodomain-like
SMARTSM007172.6E-1666114IPR001005SANT/Myb domain
PfamPF002493.1E-1667112IPR001005SANT/Myb domain
CDDcd001674.68E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTAE EDEKLTKYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQTILN LHSVLGNKWS TIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELME QNSWEKQAVR LQTEAAQIAK LQYLQYLLQP  180
PAASMPSLSN SLSPTIPDME AYNLLNSLSA VKDSQVLSTN PMETPIPSSI MATNTLQAVH  240
ESIPFSHLPD LESPCSFQTS MNKDHMVQAS TLTILCSQGE NSPTSPWLPH SSLSPSPPPP  300
PVIPPMTEVS ITNGGDACST SSYEGGPSSI WPELLLDDPL FHEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077189.10.0transcription factor MYB92-like
RefseqXP_027177631.10.0transcription factor MYB92-like
SwissprotQ9S9Z21e-109MYB93_ARATH; Transcription factor MYB93
SwissprotQ9SBF31e-109MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A068TZV30.0A0A068TZV3_COFCA; Uncharacterized protein
STRINGVIT_07s0141g00100.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-99myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]