PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g14500
Common NameGSCOC_T00036608001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 298aa    MW: 33418.8 Da    PI: 6.5847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g14500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-1498149155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Cc07_g14500  98 QRMTHIAVERNRRRQMNDYLAVLRSMMPPS---YAQRGDQASIVGGAINFVKELE 149
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.04E-1396153No hitNo description
SuperFamilySSF474594.19E-1796167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.60597148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1198149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1398165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MALETIVFQQ DPFSYGCNQE ICDLWGLGIH ENQGKINSEI FEQGLISGAW ESSINSSSDT  60
STVEGSIAGS NPAPVVMPGR KRRRRTKSFK NKEEMENQRM THIAVERNRR RQMNDYLAVL  120
RSMMPPSYAQ RGDQASIVGG AINFVKELEQ LLQFLQSHKQ VKQQSSTIHS NLFDNFFTFP  180
QYSTCPSRQN MDNSMAADDA MAEKHSTIAD VEVTMAENHA NIKLLTRRRP KQLLTIITGF  240
HSLSLAILHL NITTRDHLVL YSFSVKVEDD CQLTSVNEIA TAVHDLVGMI HEEAVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983RKRRR
27985RKRRRRT
398109RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074088.10.0transcription factor bHLH96-like
SwissprotQ9C7T42e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A068U0140.0A0A068U014_COFCA; Uncharacterized protein
STRINGXP_010272971.11e-112(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]