PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g14010
Common NameGSCOC_T00036666001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 517aa    MW: 57437.6 Da    PI: 6.1195
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g14010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.3e-16336387155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Cc07_g14010 336 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 387
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.48E-18212303No hitNo description
SMARTSM003801.5E-22213307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-12213302IPR001471AP2/ERF domain
PROSITE profilePS5103216.647213301IPR001471AP2/ERF domain
PRINTSPR003679.4E-6214225IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-9265303IPR016177DNA-binding domain
PRINTSPR003679.4E-6283303IPR001471AP2/ERF domain
CDDcd000181.39E-11336395No hitNo description
PfamPF008472.5E-10336387IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18336396IPR016177DNA-binding domain
SMARTSM003803.2E-31337401IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18337395IPR001471AP2/ERF domain
PROSITE profilePS5103219.203337395IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAPENNWLSF SLSSMEMLSS SASQPQMLQS TMKLAPFDAD SQQHYYYSDH FYTNGWQNSK  60
PEEVTEQSNM NVYTTFLDQN QAPPKLEDFL GGDSTETQDS SLTHISASAA AAAYFNDHHH  120
QDLKNITGFQ AFSTNSGSEV DDSASVARTQ VMCAEFTGQS IESGTELAYP QCPTGALSLG  180
VNAQNPPDQK AIVAVDSESC KKITDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  240
ARKGRQVLMF LSFFGMEWPF DSPENNLPKY AGGYDKEEKA ARAYDLAALK YWGPTATTNF  300
PVSNYSKELE EMKHVTKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN  360
KDLYLGTFAT EEEAAEAYDI AAIKFRGMNA VTNFEMNRYD VEAIMKSALP IGGAAKRLKL  420
SLESEQKPSI SNDQQTQCSS NGSNTINFAA FQPISSVPCG VPFDNTPPPY YHHNLFHQIS  480
SNNTGTPDTT GPISMITPVP LLPSPAEFFL WPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074155.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-169AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A068U1U00.0A0A068U1U0_COFCA; Uncharacterized protein
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-168AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]