PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g13590
Common NameGSCOC_T00036717001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 542aa    MW: 58957.5 Da    PI: 4.892
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g13590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.63e-1391695331374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cAea+++++++ a+al++++  la ++  +m+++a+yf+eALa+r+++        + p+++ e++ s++l++   f+e +P+lkf+h+ta
  Cc07_g13590 169 LVHTLMACAEAIQQDNMKVADALVKHIGILAVSQVGAMRKVATYFAEALARRIYK--------IYPQDSLESSYSDVLQM--HFYESCPYLKFAHFTA 256
                  689****************************************************........44555555556666555..4*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+f f+ +va++l+dl+ ++L++
  Cc07_g13590 257 NQAILEAFSGASRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAHLAKTIGVEFAFRGFVANSLADLDASMLEI 354
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.eerikvErell 290
                  +p   Ea+aVn+v++lhrll++++++++    vL+ +ks++Pk+v vveqea+hn++ F++rf eal+yys++fdsl +++l ++s +++ ++++++l
  Cc07_g13590 355 RPceVEAVAVNSVFELHRLLSRPGAIDK----VLNSIKSMRPKIVAVVEQEANHNGNVFMDRFNEALHYYSTMFDSLeSSGLTQQSnSQDLVMSEVYL 448
                  **999***************88888877....*********************************************767788777799********* PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  gr+i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Cc07_g13590 449 GRQICNVVACEGVDRVERHETLTQWRGRMNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 533
                  ************************************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120417.1E-22150IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.0E-17158No hitNo description
PROSITE profilePS5098567.247143512IPR005202Transcription factor GRAS
PfamPF035141.0E-136169533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAEVAQKLEQ LERVMGTTME DGISCLSDTV HYNPSDLSGW VQSMLSELNN VNLPPSSATS  60
IISYDEISPA IGGTDGATND RDLIFDDDLR AIPGDAIFCN SNNNNNSATS KENAKESSPS  120
CESNKRMKSS PSSTGSDFGG ISVSSINPPS SDAARPVVLV DSQETGIRLV HTLMACAEAI  180
QQDNMKVADA LVKHIGILAV SQVGAMRKVA TYFAEALARR IYKIYPQDSL ESSYSDVLQM  240
HFYESCPYLK FAHFTANQAI LEAFSGASRV HVIDFSLKQG MQWPALMQAL ALRPGGPPAF  300
RLTGIGPPQP DNSDALQQVG WKLAHLAKTI GVEFAFRGFV ANSLADLDAS MLEIRPCEVE  360
AVAVNSVFEL HRLLSRPGAI DKVLNSIKSM RPKIVAVVEQ EANHNGNVFM DRFNEALHYY  420
STMFDSLESS GLTQQSNSQD LVMSEVYLGR QICNVVACEG VDRVERHETL TQWRGRMNSA  480
GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENDGCLMLG WHTRPLIATS AWQLRDGSES  540
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6616453514381Protein SCARECROW
5b3h_A1e-6616453513380Protein SCARECROW
5b3h_D1e-6616453513380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074537.10.0DELLA protein GAI-like
RefseqXP_027078270.10.0DELLA protein GAI-like
RefseqXP_027178624.10.0DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLA0A068TZ890.0A0A068TZ89_COFCA; Uncharacterized protein
STRINGXP_009796771.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]