|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc07_g13590 |
Common Name | GSCOC_T00036717001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
GRAS |
Protein Properties |
Length: 542aa MW: 58957.5 Da PI: 4.892 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc07_g13590 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 455.6 | 3e-139 | 169 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
lv++L++cAea+++++++ a+al++++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ s++l++ f+e +P+lkf+h+ta
Cc07_g13590 169 LVHTLMACAEAIQQDNMKVADALVKHIGILAVSQVGAMRKVATYFAEALARRIYK--------IYPQDSLESSYSDVLQM--HFYESCPYLKFAHFTA 256
689****************************************************........44555555556666555..4*************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
NqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+f f+ +va++l+dl+ ++L++
Cc07_g13590 257 NQAILEAFSGASRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAHLAKTIGVEFAFRGFVANSLADLDASMLEI 354
************************************************************************************************** PP
GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.eerikvErell 290
+p Ea+aVn+v++lhrll++++++++ vL+ +ks++Pk+v vveqea+hn++ F++rf eal+yys++fdsl +++l ++s +++ ++++++l
Cc07_g13590 355 RPceVEAVAVNSVFELHRLLSRPGAIDK----VLNSIKSMRPKIVAVVEQEANHNGNVFMDRFNEALHYYSTMFDSLeSSGLTQQSnSQDLVMSEVYL 448
**999***************88888877....*********************************************767788777799********* PP
GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
gr+i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
Cc07_g13590 449 GRQICNVVACEGVDRVERHETLTQWRGRMNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 533
************************************************************************************6 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0006808 | Biological Process | regulation of nitrogen utilization |
GO:0009723 | Biological Process | response to ethylene |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0010218 | Biological Process | response to far red light |
GO:0010233 | Biological Process | phloem transport |
GO:0042538 | Biological Process | hyperosmotic salinity response |
GO:2000033 | Biological Process | regulation of seed dormancy process |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MAEVAQKLEQ LERVMGTTME DGISCLSDTV HYNPSDLSGW VQSMLSELNN VNLPPSSATS 60 IISYDEISPA IGGTDGATND RDLIFDDDLR AIPGDAIFCN SNNNNNSATS KENAKESSPS 120 CESNKRMKSS PSSTGSDFGG ISVSSINPPS SDAARPVVLV DSQETGIRLV HTLMACAEAI 180 QQDNMKVADA LVKHIGILAV SQVGAMRKVA TYFAEALARR IYKIYPQDSL ESSYSDVLQM 240 HFYESCPYLK FAHFTANQAI LEAFSGASRV HVIDFSLKQG MQWPALMQAL ALRPGGPPAF 300 RLTGIGPPQP DNSDALQQVG WKLAHLAKTI GVEFAFRGFV ANSLADLDAS MLEIRPCEVE 360 AVAVNSVFEL HRLLSRPGAI DKVLNSIKSM RPKIVAVVEQ EANHNGNVFM DRFNEALHYY 420 STMFDSLESS GLTQQSNSQD LVMSEVYLGR QICNVVACEG VDRVERHETL TQWRGRMNSA 480 GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENDGCLMLG WHTRPLIATS AWQLRDGSES 540 L*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |