PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g13550
Common NameGSCOC_T00036722001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GeBP
Protein Properties Length: 328aa    MW: 36978.6 Da    PI: 5.0232
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g13550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57387.22e-2758152297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +f+r+w+e Dei +LqGl+ +++++  s   d++ fy  +++ +s  ++ksql+eK+rrL+kKf+   +++++g ++sf ++hd+  fe+sk++W+
  Cc07_g13550  58 KFHRIWTEPDEIRFLQGLLHCASDNL-SFPRDLNIFYARFSDTMSQPYTKSQLSEKLRRLRKKFRVIASRISKGLDQSFLSPHDRALFEISKRLWH 152
                  699******************77765.7778****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.4E-3059152IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDSTLAPAPP IKASASKLPI KRKTPDPNPS SHSDPDPDPD PKYSSPVPDG DPRPPPFKFH  60
RIWTEPDEIR FLQGLLHCAS DNLSFPRDLN IFYARFSDTM SQPYTKSQLS EKLRRLRKKF  120
RVIASRISKG LDQSFLSPHD RALFEISKRL WHPDYADTSP FGGVSGGKAT KSDLVGVEVS  180
FLPEILSGLH PNEVENFELK WEKSDNVVEG VDFGDMGFDG GVKLSEVNVE FEKEEEEADE  240
MGWRNGGEMG AEEVAVAKAV IDAFDKSLEE VRMGVVKDGG SLNGCEQEEE GKRWDFDRRW  300
KVQRVAELDV LTRRMRLVFE QSLLRRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073921.10.0probable transcription factor At5g28040
RefseqXP_027077713.10.0probable transcription factor At5g28040
RefseqXP_027177670.10.0probable transcription factor At5g28040
TrEMBLA0A068U0C20.0A0A068U0C2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000968758e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-19DNA-binding storekeeper protein-related transcriptional regulator