PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g11890
Common NameGSCOC_T00036944001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 280aa    MW: 31000.7 Da    PI: 5.6409
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g11890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2197157257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql++Le+ F + n  ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Cc07_g11890  97 RQRWTPTPVQLQILERIFDQgNGAPSKQKIKEITNELlqhgQISETNVYNWFQNRRARSKR 157
                  89*****************99**************************************97 PP
2Wus_type_Homeobox97.21.3e-3197159365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G   P+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq
        Cc07_g11890  97 RQRWTPTPVQLQILERIFDQGNGAPSKQKIKEITNELLQHGQISETNVYNWFQNRRARSKRKQ 159
                        89***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.99793158IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-1893164IPR009057Homeodomain-like
SMARTSM003892.1E-1395162IPR001356Homeobox domain
SuperFamilySSF466897.7E-1895162IPR009057Homeodomain-like
PfamPF000464.0E-1997157IPR001356Homeobox domain
CDDcd000861.66E-1497159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEWDKQPPQQ PQATTAAAAA AAAAAEELNN GGMFVKVMTD EQMEVLRKQI AVYATICEQL  60
VDLHKSLTSH HDLAGARLGN LYCDPLVTSA GHKITGRQRW TPTPVQLQIL ERIFDQGNGA  120
PSKQKIKEIT NELLQHGQIS ETNVYNWFQN RRARSKRKQQ AAASNNIESE VETEVESPND  180
KKTKPEDLQS PHIPTSRNEE LCFQNTDVSS GMLSIDPRSS KPEPMFPSDG SSKSAGSFGQ  240
MSFYGSMLSN PRMDQLLGKM EVPESYSPYL HAEDYNMTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076418.10.0WUSCHEL-related homeobox 8-like isoform X1
SwissprotQ5QMM31e-90WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A068TZT50.0A0A068TZT5_COFCA; Uncharacterized protein
STRINGSolyc02g082670.2.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-78WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]