PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g11770

Common Name

GSCOC_T00036960001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 330aa MW: 37712.4 Da PI: 7.015

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g11770	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.1	2.7e-26	202	251	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ledl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl Cc07_g11770 202 ARLALEDLAKYFDLPIIEASKNLKVGLTVLKKKCREFGIPRWPHRKIKSL 251 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.803	186	271	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	204	251	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MASLQASPPL KALVVFRNRI HKELIRSIHV YQLEGGAEEV VEREYLFLEN LEYEEMKFLG 60 KVFTLQKFDV SAHFAGMANG VWDCIYVFNM DLDKQPNLEM IPEDLSITRN PKLASIPSLS 120 NDLEMIFKLG HKIECGDPSK VLPEEGEEIH SDVGHLTQRA QHVPVLDLNS LPCSGSDNEE 180 NNQNAAGVVE KKQKRAATKD IARLALEDLA KYFDLPIIEA SKNLKVGLTV LKKKCREFGI 240 PRWPHRKIKS LDSLIQDLQG EVKRQLEEDE AAAMAVAKRQ RMIESEKESI EKKPFLDIQW 300 ETKKFRQDIF KRRHRARALE NQSRTLSLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073151.1	0.0	protein RKD5-like
Refseq	XP_027076646.1	0.0	protein RKD5-like
TrEMBL	A0A068U0G8	0.0	A0A068U0G8_COFCA; Uncharacterized protein
STRING	XP_009766399.1	1e-119	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14425	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-71	RWP-RK domain-containing protein