PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g11170
Common NameGSCOC_T00037031001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 266aa    MW: 29191.6 Da    PI: 9.7077
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g11170genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1254.2e-08194242452
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  ++r +r++kNRe+A r     +a++ eLe +v +L +eN +L+++  +l
  Cc07_g11170 194 DRRHKRMIKNRESAARESFHYLAYTNELELEVNNLMEENARLREQQRQL 242
                  689************999*************************876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-8186242No hitNo description
CDDcd147071.26E-19195246No hitNo description
PfamPF077161.0E-4195242IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-6195242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MWSSNSSKSL KRLNKIAGTS SPSSSSTSSS SQSSAASRQK PRGIYKTMEE VWKDINLSSL  60
QDQPSSRDDP SSTTTFRGMI FQDFLARPFD KDPPTTTPAT GYCSPPPPPP PPPPQATMLT  120
LNSSGPDEFH LFGNSNPLRQ TPLLGPQQSI SHACSNLSMQ FNDALGSCAA GMHAHGNGKK  180
RCPEPQTNSS GSGDRRHKRM IKNRESAARE SFHYLAYTNE LELEVNNLME ENARLREQQR  240
QLCLAAVNQQ VPRKHALYRT LTAPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073256.11e-167protein FD-like
TrEMBLA0A068U0L20.0A0A068U0L2_COFCA; Uncharacterized protein
STRINGXP_009599728.11e-53(Nicotiana tomentosiformis)
STRINGXP_010266024.16e-53(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35722239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.12e-23bZIP family protein