PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g10550

Common Name

GSCOC_T00037101001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

BBR-BPC

Protein Properties

Length: 324aa MW: 36251.9 Da PI: 8.5701

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g10550	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	302	2.2e-92	34	323	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..salpvgvqvlsgtksidslqqlse.pqled 121 m++ aerda+i+ern+al e+k a+ erdma lqrd+a+aern a+ erd++++al+ ++ s++ +++++ +v +gt+ ++ ++++ + + Cc07_g10550 34 TYMAITAERDAAIQERNMALEERKRAFSERDMAMLQRDAAIAERNSAIQERDEAIAALQIRDCSVNnmLSDSAEDGVADGTEDMHYQHMHHAmVNAAF 131 4689999***************************************************999988655677888999**98888544566667 PP GAGA_bind 122 savelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader...............skaekksidlvlngvslD 204 s+ ++ +e+ ++ ++ +++ +a++++++k+++ +k+ k++++ k + ++ + +++s++ ++k+ +++ln++++D Cc07_g10550 132 SPRDILTSETFNSAQVASETAKATKVRQPKEGKMTKSVKSPRSPKRRAEGMIK--PLTPASSN-GwnaghdlkreeelegHLGTWKD-NIGLNQINFD 225 77778889999999999999999999999988888877777766555543222..22111111.01234455556677656666765.8***** PP GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkHGtnkfvtir 301 e+++PvPvCsCtG+++ CYkWGnGGWqSaCCttt+SvyPLP+++++r +R++grKmS++af+klL++L aeG+dl s p+DLk+hWAkHGtn++ t++ Cc07_g10550 226 ETAMPVPVCSCTGTPQPCYKWGNGGWQSACCTTTMSVYPLPQVSNKRYTRVGGRKMSGSAFNKLLNRLVAEGHDLySAPLDLKEHWAKHGTNRYSTLK 323 **********************************************************************8799**************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.8E-100	1	323	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.8E-84	21	323	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MLGRKNYEYF HFRNGLLVSP AWLVMDHNHF SIKTYMAITA ERDAAIQERN MALEERKRAF 60 SERDMAMLQR DAAIAERNSA IQERDEAIAA LQIRDCSVNN MLSDSAEDGV ADGTEDMHYQ 120 HMHHAMVNAA FSPRDILTSE TFNSAQVASE TAKATKVRQP KEGKMTKSVK SPRSPKRRAE 180 GMIKPLTPAS SNGWNAGHDL KREEELEGHL GTWKDNIGLN QINFDETAMP VPVCSCTGTP 240 QPCYKWGNGG WQSACCTTTM SVYPLPQVSN KRYTRVGGRK MSGSAFNKLL NRLVAEGHDL 300 YSAPLDLKEH WAKHGTNRYS TLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074875.1	0.0	protein BASIC PENTACYSTEINE6-like
Refseq	XP_027078453.1	0.0	protein BASIC PENTACYSTEINE6-like
Refseq	XP_027178743.1	0.0	protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	2e-84	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A068U164	0.0	A0A068U164_COFCA; Uncharacterized protein
STRING	XP_009789611.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-86	basic pentacysteine 6