PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g10400

Common Name

GSCOC_T00037120001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 799aa MW: 86466.1 Da PI: 4.8187

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g10400	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5e-06	775	798	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C + H+ Cc07_g10400 775 GQRVCK-FYESGHCKKGASCDYLHP 798 6799.8899***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	1.31E-16	156	218	IPR003169	GYF domain
PROSITE profile	PS50829	15.28	166	219	IPR003169	GYF domain
CDD	cd00072	4.07E-16	166	219	No hit	No description
SMART	SM00444	1.6E-13	167	221	IPR003169	GYF domain
Pfam	PF02213	1.4E-11	168	210	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	3.3E-15	168	219	IPR003169	GYF domain
SuperFamily	SSF90229	4.55E-6	773	797	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.295	774	798	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-4	777	797	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MLFLFSTFPI YRLKIKLPQC NSLTSFTLRE CIEKLQLLKT PEERQRRLTE IPKVHADPKM 60 NPNYKSEEDI AGELLKSKIS SFNKNESQSI SPKSRAKEDG MNRSHQSRQK RDARGLSGPA 120 KNEMQVPVSG SESGSGNQQV VRFGSETSTA TLPTGSSTPA NTSETEKIWH YRDPNGRIQG 180 PFAMVQLRKW STTGYFPADM RIWTINELDE SVLLIDALNE FFHKDYRSLH NVSRPQENGP 240 ASSDNGTLHS FNPDQTFVAP LHQERGYGIE ELKSVLDHEN QSPHETPTDQ ATGVQCNEKS 300 SSSQSYVGQS SGQNCRSVPL NLDLNRKDCN SSLASVTTPS DSAEQQGDID ILDLPSPTPK 360 TSKSNVEGQD VEKKESGFDG HVQGSEKSDL PSPSPKPIDD DVPDPTPEPM DEDLAGITYP 420 PKNEVLPSPS PIPTGGDVRE QIDKTNQPPL PKVSVPDSGP GWNSTSGLRV GEAQLQKIAD 480 EWDGYSPTDP KPSVQEWDTS LAPVASLKPP EVLGDHVTPG SINNTTQLVH ASPCQPASNI 540 SSWQAIVNEP IEFSTLAEES VSDLLAEVDA MESQSGLASP TSGMKCSDEM MDSCRNDCFS 600 SIEELSPTAD AGKSDAVSSN REVQFPPSVT DDPGGTSQAD GFDRLKASGG HSTSSSEGET 660 KSADAPVDPR ETGLDVHPPP ACTMSQGMVG STGFPNMGWG TGMVPPWGNP SYNLGGYNGS 720 LPWDSPRRYN GERFAGPRDW GFQGGDSGFG RGRPMWSRQS HGGGGGGYSR PPHKGQRVCK 780 FYESGHCKKG ASCDYLHP*

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MLFLFSTFPI YRLKIKLPQC NSLTSFTLRE CIEKLQLLKT PEERQRRLTE IPKVHADPKM  60
NPNYKSEEDI AGELLKSKIS SFNKNESQSI SPKSRAKEDG MNRSHQSRQK RDARGLSGPA  120
KNEMQVPVSG SESGSGNQQV VRFGSETSTA TLPTGSSTPA NTSETEKIWH YRDPNGRIQG  180
PFAMVQLRKW STTGYFPADM RIWTINELDE SVLLIDALNE FFHKDYRSLH NVSRPQENGP  240
ASSDNGTLHS FNPDQTFVAP LHQERGYGIE ELKSVLDHEN QSPHETPTDQ ATGVQCNEKS  300
SSSQSYVGQS SGQNCRSVPL NLDLNRKDCN SSLASVTTPS DSAEQQGDID ILDLPSPTPK  360
TSKSNVEGQD VEKKESGFDG HVQGSEKSDL PSPSPKPIDD DVPDPTPEPM DEDLAGITYP  420
PKNEVLPSPS PIPTGGDVRE QIDKTNQPPL PKVSVPDSGP GWNSTSGLRV GEAQLQKIAD  480
EWDGYSPTDP KPSVQEWDTS LAPVASLKPP EVLGDHVTPG SINNTTQLVH ASPCQPASNI  540
SSWQAIVNEP IEFSTLAEES VSDLLAEVDA MESQSGLASP TSGMKCSDEM MDSCRNDCFS  600
SIEELSPTAD AGKSDAVSSN REVQFPPSVT DDPGGTSQAD GFDRLKASGG HSTSSSEGET  660
KSADAPVDPR ETGLDVHPPP ACTMSQGMVG STGFPNMGWG TGMVPPWGNP SYNLGGYNGS  720
LPWDSPRRYN GERFAGPRDW GFQGGDSGFG RGRPMWSRQS HGGGGGGYSR PPHKGQRVCK  780
FYESGHCKKG ASCDYLHP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073582.1	0.0	zinc finger CCCH domain-containing protein 44-like isoform X1
TrEMBL	A0A068U180	0.0	A0A068U180_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2181	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	6e-39	nucleic acid binding;zinc ion binding;DNA binding