PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09180
Common NameGSCOC_T00040314001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 555aa    MW: 61863 Da    PI: 5.921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.3e-921965532374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  v+ L++ Ae++++++l+l++ +L rl+++ + p+g+p+qR+a+yf+eAL++ l++      ++  ++++++++++++++a+k+fs++sP++ fs +ta
  Cc07_g09180 196 VDELIRLAECFETNSLHLTHVILGRLNQRlRGPTGKPLQRAAFYFKEALQTLLTG------STRLTQPSTSSEVIQSIKAHKAFSNISPVPMFSSFTA 287
                  678*************************99*************************......556666777778************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  Nqa+leav+g+  +H+iDfdi+ G++W++++++La+++    + pp lRiT+v+ +e   + e + ++e+L++fA+el++ f+ ++++++++e  +++
  Cc07_g09180 288 NQAVLEAVDGSMLIHVIDFDIGLGGHWASFMKELADKAelrkAAPPVLRITAVVGEE--YAMESKLIRENLSQFARELNIGFDLDFVLVRTFEFCSFK 383
                  ***********************************8776666889**********66..999999********************************* PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpres..eerikvE 286
                  ++++ +gE++a+ l+  ++r +          + +L+ ++++sP+vvv+ + e     ++ sF + +++ le+ys+l++slea  +     ++++k+E
  Cc07_g09180 384 AIKFMEGEKVAILLSPTIFRRV---------GTGFLSDLRRVSPHVVVHLDCEGLIgfGTMSFRQTLIDGLEFYSTLLESLEAANGGGGadDWMNKME 472
                  ******************9998.........368*******************555449**********************665443323599***** PP

         GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +++ ++i ++v  +g++        + Wre++ +aG++pv+ls++a  qa++l+r+v+++g++v  ++++++l+W++r+Lv++SaWr
  Cc07_g09180 473 SFVIYPKILEAVGVAGRR-------GAPWREAFVAAGLRPVALSQFADFQAECLIRRVQVRGFHVARRQAEMLLCWHERALVATSAWR 553
                  ****************98.......89************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.42169533IPR005202Transcription factor GRAS
PfamPF035141.8E-89196553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MKVPFIQNQP SILNSTKQVN CNDNNNDLRT TTTTTSINSN TFLGYEPKSV LELRQSPSPV  60
TEIPSSNTDI STVWDDTGLQ LEDHVLNHFE VDWDSLMREL GLHEDSNPTP TSRPTTFSHS  120
QFTPSGSQVQ FQNLPEFPPT HNSFDSTLFV PSDITLPDIS TYPSSFNDSS INSLGLSHDA  180
HHHNTNLTWN PGFDYVDELI RLAECFETNS LHLTHVILGR LNQRLRGPTG KPLQRAAFYF  240
KEALQTLLTG STRLTQPSTS SEVIQSIKAH KAFSNISPVP MFSSFTANQA VLEAVDGSML  300
IHVIDFDIGL GGHWASFMKE LADKAELRKA APPVLRITAV VGEEYAMESK LIRENLSQFA  360
RELNIGFDLD FVLVRTFEFC SFKAIKFMEG EKVAILLSPT IFRRVGTGFL SDLRRVSPHV  420
VVHLDCEGLI GFGTMSFRQT LIDGLEFYST LLESLEAANG GGGADDWMNK MESFVIYPKI  480
LEAVGVAGRR GAPWREAFVA AGLRPVALSQ FADFQAECLI RRVQVRGFHV ARRQAEMLLC  540
WHERALVATS AWRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2220155225378Protein SCARECROW
5b3h_A2e-2220155224377Protein SCARECROW
5b3h_D2e-2220155224377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075597.10.0scarecrow-like protein 15
TrEMBLA0A068U5B90.0A0A068U5B9_COFCA; Uncharacterized protein
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-142GRAS family protein