PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09170
Common NameGSCOC_T00040313001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 358aa    MW: 37951.6 Da    PI: 5.0174
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09170genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1772.3e-24259321163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN+aL++el++ ++e++kl+se+
  Cc07_g09170 259 ERELKRQKRKQSNRESARRSRLRKQAECEELQQRVESLNSENRALRDELQKVSEECEKLTSEN 321
                  89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.5E-29192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-9114227No hitNo description
Gene3DG3DSA:1.20.5.1707.5E-19254318No hitNo description
PfamPF001709.8E-21259321IPR004827Basic-leucine zipper domain
SMARTSM003388.2E-21259323IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.323261324IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.46E-11262318No hitNo description
CDDcd147021.77E-25264314No hitNo description
PROSITE patternPS000360266281IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGTGEESTPA KPSKPTSTNQ ETPATPSYPD WSTSMQAYYG AGATPPFFAS TVASPSPHPY  60
LWGNQHPLMP PYGTPVPYPA LYPGGVYAHP NMAMAPGAVQ VPIESDAKAP DGKDRNTNKK  120
LKGPSGNPGL IAVKAGESGK AASGSGNDGA TQSAESGSEG SSDGSDENNN HELSATKKGS  180
FDQMLADGAT AQNNTSVAHF QNSVPGNPVV SVPATNLNIG MDLWNPSSGA SGAMKMRPNP  240
GVSPAVAPGM MTDQWIQDER ELKRQKRKQS NRESARRSRL RKQAECEELQ QRVESLNSEN  300
RALRDELQKV SEECEKLTSE NNSIKEELTR LCGPEAVAKL ESSSITQLET NGDEDDH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRSRLRK
2275282RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075598.10.0G-box-binding factor 1
RefseqXP_027075599.10.0G-box-binding factor 1
RefseqXP_027075600.10.0G-box-binding factor 1
SwissprotP427741e-111GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A068U3D40.0A0A068U3D4_COFCA; Uncharacterized protein
STRINGXP_009803268.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-94G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]