PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g08030
Common NameGSCOC_T00040165001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 97aa    MW: 11465.4 Da    PI: 10.319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g08030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++ +++G g W+ ++ + g++R++k+c++rw++yl
      Cc07_g08030  9 KGAWTEEEDILLRKCMEKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYL 56
                     79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.681460IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-22558IPR009057Homeodomain-like
SMARTSM007173.6E-14858IPR001005SANT/Myb domain
PfamPF002493.8E-16956IPR001005SANT/Myb domain
SuperFamilySSF466892.05E-211083IPR009057Homeodomain-like
CDDcd001674.11E-101156No hitNo description
Gene3DG3DSA:1.10.10.602.2E-55983IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MRNTDGLRKG AWTEEEDILL RKCMEKYGEG KWHQVPVRAG LNRCRKSCRL RWLNYLRPDI  60
KRGDFASDEV DLLIRLQKLL GNRPVLFSFS FFFLVF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079539.19e-55transcription factor MYB113-like
SwissprotQ9FNV98e-41MY113_ARATH; Transcription factor MYB113
TrEMBLA0A068U5365e-64A0A068U536_COFCA; Uncharacterized protein
STRINGEOY039645e-45(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-42myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]