PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g07810 | ||||||||
Common Name | GSCOC_T00040141001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39679.8 Da PI: 5.9496 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 193 | 236 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Cc07_g07810 193 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 236 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 190 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 193 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.60E-5 | 194 | 241 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 194 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00315 | 286 | 349 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEHTDQTQNG LLEEFLVAPK LDSYWTTFPG GGIEIFPNGW NCESFDRNDH NQDLLTSNPN 60 SNSLLGLLSS PAALLAAGSH ESGFAFPFGE STSYPFLDHV GDGFSTAVPE LGSSYDRSNF 120 DSLPPVPIQQ DYGEGMVEHG GNLGLRGLQE GKGFCKVEVE QPTATSIGAS RVGLCGDKRS 180 KIKKAEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI DYMKELLDKI 240 HKSREESTEE NINQLTKIGN LKQLKPNEVV ARNPPKFDVE RRSVDTRIEI CCTAKPGMLL 300 STVSTMEALG LDIQQCVISC FNDFSVQASC SEVAEHRRIV GSEDVKQALF RNAGYGGRCL 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 183 | KRSKIKK |
2 | 195 | 202 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027076135.1 | 0.0 | transcription factor bHLH61-like isoform X1 | ||||
Refseq | XP_027076136.1 | 0.0 | transcription factor bHLH61-like isoform X2 | ||||
TrEMBL | A0A068U2H5 | 0.0 | A0A068U2H5_COFCA; Uncharacterized protein | ||||
STRING | EOX91851 | 1e-121 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 7e-84 | beta HLH protein 93 |