PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07390
Common NameGSCOC_T00040088001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 288aa    MW: 31656 Da    PI: 6.6806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.3e-1463114356
          AP2   3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GV +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g+
  Cc07_g07390  63 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRGA 114
                  9****99**********988532...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.256126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-6227IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-5228IPR016177DNA-binding domain
CDDcd000182.61E-2461123No hitNo description
SuperFamilySSF541713.47E-1761123IPR016177DNA-binding domain
PROSITE profilePS5103219.11162121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1962121IPR001471AP2/ERF domain
SMARTSM003801.2E-3062127IPR001471AP2/ERF domain
PRINTSPR003673.0E-56374IPR001471AP2/ERF domain
PfamPF008472.8E-863113IPR001471AP2/ERF domain
PRINTSPR003673.0E-5103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEEKAARAYD LAALKYWGPS THINFPLENY QHELEEMKSM ARQEYVAHLR RKSSGFSRGA  60
SMYRGVTSRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGANAVTNF  120
DISRYDVDRI MASSNLLAGE LARRNNNLES SNDISIGNPS NLNCNEEVNT TSKENNDNVL  180
DWNTSSFPMS VNDLMGMETL STTAHQEAAG SGKMTTHFSE PSSLVTSLSC SREGSPDKSN  240
SLPMQFTIPP AASKLFASPS PHAANPWISS TQLRPHVSVF ASWADAS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078436.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
RefseqXP_027178539.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-102CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A068U3A40.0A0A068U3A4_COFCA; Uncharacterized protein
STRINGVIT_07s0151g00440.t011e-122(Vitis vinifera)
STRINGPGSC0003DMT4000552101e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-86AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]