PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07150
Common NameGSCOC_T00040052001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 297aa    MW: 32230 Da    PI: 8.1691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
      Cc07_g07150  5 KQKWTPEEEAALKAGIAKYGVGKWSTILKDPEfsavlRSRSNVDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.462161IPR017930Myb domain
SuperFamilySSF466895.23E-16259IPR009057Homeodomain-like
SMARTSM007179.9E-9459IPR001005SANT/Myb domain
PfamPF002492.8E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14555IPR009057Homeodomain-like
CDDcd116604.76E-20657No hitNo description
SMARTSM005261.3E-14118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.81E-15118190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.368120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-15122191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.8E-9125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGI AKYGVGKWST ILKDPEFSAV LRSRSNVDLK DKWRNINVMA  60
NGWGSRQRGR PGYKIAQQTA KLEDITRDLS PVVTNVPELV DAEPLSVISV KEPNSSSKTP  120
ISRLDDLILE AIAKLKEPRG SNRAAISLYI EERYLTPPNF ERLLAANLKL LTEKGRLIKV  180
KHQYRIAPTS ATIDLGIDPP PLLLEVVQKD SSNGEKKGTK VLTKAQIDAE LERLRSMTAA  240
EAAAAAAQAV AEAEAAIAEA EVAAREAEEA EAEAEAAQCF AEAALKALKC RTVLVW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075217.10.0single myb histone 6-like isoform X1
RefseqXP_027079170.10.0single myb histone 6-like isoform X1
RefseqXP_027079171.10.0single myb histone 6-like isoform X1
RefseqXP_027179811.10.0single myb histone 6 isoform X1
TrEMBLA0A068U2430.0A0A068U243_COFCA; Uncharacterized protein
STRINGSolyc02g064630.2.16e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-66telomere repeat binding factor 1