|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc07_g06890 |
Common Name | GSCOC_T00040016001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
GRAS |
Protein Properties |
Length: 449aa MW: 50304.6 Da PI: 6.5092 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc07_g06890 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 305.5 | 1.3e-93 | 56 | 445 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfshl 96
++lL++cA+a++s+d++l+q++L+ l+++a pdgd++qRl+ f++AL ar a+ s+l +a++ +t+ ++++++ +l f++++P+++f++
Cc07_g06890 56 EQLLIHCANAIESNDATLTQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAKsGNSKLLSAMANVNTNMGINTHKFSIIELasFVDLTPWHRFGFT 153
79****************************************************4456788888777776554555555555566************* PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......va 183
+aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R eg p +++T+ + g ++ee+g++L +fA++ +v +ef+v+ +
Cc07_g06890 154 AANTAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIATRLEGHPLVKLTVACITD-GippvIDLSYEELGSKLINFARSRNVVLEFRVIpstsadgFS 250
*************************************************987744.34878999************************9887544444 PP
GRAS 184 krledleleeL.rvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
+ +e+l+++++ r ++gEal++n++++lh++++e++++ + r+ +Lk ++sl+P+v+v+v+++ad++s++++ r+ +a++y + +d++++
Cc07_g06890 251 SLFEQLRMQQIvRADNGEALVINCHMMLHYIPEETLHQLEssqnasLRTMFLKRLRSLEPTVLVLVDEDADLTSNNLVSRLRSAFNYLWIPYDTVDTF 348
4555555555544445****************77754322234455899************************************************* PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
lpr s++r+++E+ + ++i+nv+a+eg +r+er e +++W +r++++ Fk v++se+a +++k++l +++ g+ ++ e++ lvl+Wk++++v+++a
Cc07_g06890 349 LPRGSKQRQWYEAD-ICWKIENVIAHEGLQRIERLEPKNRWVQRMRSSSFKGVSFSEDAFSEVKSMLDEHA-AGWGLKREEEDLVLTWKGHNVVFATA 444
**************.********************************************************.8999********************** PP
GRAS 373 W 373
W
Cc07_g06890 445 W 445
* PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MMQFTGTLQS PPLHQISPFV VPSMNKNQIH RTRPWPGFPT SKSSLGGSFG DANCMEQLLI 60 HCANAIESND ATLTQQILWV LNNIAPPDGD SNQRLTCGFL RALIARAAKS GNSKLLSAMA 120 NVNTNMGINT HKFSIIELAS FVDLTPWHRF GFTAANTAIL EAVEGYSVIH IVDLSLTHCM 180 QIPTLIDAIA TRLEGHPLVK LTVACITDGI PPVIDLSYEE LGSKLINFAR SRNVVLEFRV 240 IPSTSADGFS SLFEQLRMQQ IVRADNGEAL VINCHMMLHY IPEETLHQLE SSQNASLRTM 300 FLKRLRSLEP TVLVLVDEDA DLTSNNLVSR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE 360 ADICWKIENV IAHEGLQRIE RLEPKNRWVQ RMRSSSFKGV SFSEDAFSEV KSMLDEHAAG 420 WGLKREEEDL VLTWKGHNVV FATAWVPT*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |