PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g06890
Common NameGSCOC_T00040016001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 449aa    MW: 50304.6 Da    PI: 6.5092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g06890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.51.3e-93564452373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfshl 96 
                  ++lL++cA+a++s+d++l+q++L+ l+++a pdgd++qRl+  f++AL ar a+   s+l +a++  +t+    ++++++ +l  f++++P+++f++ 
  Cc07_g06890  56 EQLLIHCANAIESNDATLTQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAKsGNSKLLSAMANVNTNMGINTHKFSIIELasFVDLTPWHRFGFT 153
                  79****************************************************4456788888777776554555555555566************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......va 183
                  +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R eg p +++T+    + g       ++ee+g++L +fA++ +v +ef+v+        +
  Cc07_g06890 154 AANTAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIATRLEGHPLVKLTVACITD-GippvIDLSYEELGSKLINFARSRNVVLEFRVIpstsadgFS 250
                  *************************************************987744.34878999************************9887544444 PP

         GRAS 184 krledleleeL.rvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                  + +e+l+++++ r ++gEal++n++++lh++++e++++ +       r+ +Lk ++sl+P+v+v+v+++ad++s++++ r+ +a++y +  +d++++ 
  Cc07_g06890 251 SLFEQLRMQQIvRADNGEALVINCHMMLHYIPEETLHQLEssqnasLRTMFLKRLRSLEPTVLVLVDEDADLTSNNLVSRLRSAFNYLWIPYDTVDTF 348
                  4555555555544445****************77754322234455899************************************************* PP

         GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                  lpr s++r+++E+  + ++i+nv+a+eg +r+er e +++W +r++++ Fk v++se+a +++k++l +++  g+ ++ e++ lvl+Wk++++v+++a
  Cc07_g06890 349 LPRGSKQRQWYEAD-ICWKIENVIAHEGLQRIERLEPKNRWVQRMRSSSFKGVSFSEDAFSEVKSMLDEHA-AGWGLKREEEDLVLTWKGHNVVFATA 444
                  **************.********************************************************.8999********************** PP

         GRAS 373 W 373
                  W
  Cc07_g06890 445 W 445
                  * PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.48929427IPR005202Transcription factor GRAS
PfamPF035144.4E-9156445IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MMQFTGTLQS PPLHQISPFV VPSMNKNQIH RTRPWPGFPT SKSSLGGSFG DANCMEQLLI  60
HCANAIESND ATLTQQILWV LNNIAPPDGD SNQRLTCGFL RALIARAAKS GNSKLLSAMA  120
NVNTNMGINT HKFSIIELAS FVDLTPWHRF GFTAANTAIL EAVEGYSVIH IVDLSLTHCM  180
QIPTLIDAIA TRLEGHPLVK LTVACITDGI PPVIDLSYEE LGSKLINFAR SRNVVLEFRV  240
IPSTSADGFS SLFEQLRMQQ IVRADNGEAL VINCHMMLHY IPEETLHQLE SSQNASLRTM  300
FLKRLRSLEP TVLVLVDEDA DLTSNNLVSR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE  360
ADICWKIENV IAHEGLQRIE RLEPKNRWVQ RMRSSSFKGV SFSEDAFSEV KSMLDEHAAG  420
WGLKREEEDL VLTWKGHNVV FATAWVPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-505044882475Protein SHORT-ROOT
5b3h_B3e-505044828421Protein SHORT-ROOT
5b3h_E3e-505044828421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074095.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A068U3450.0A0A068U345_COFCA; Uncharacterized protein
STRINGEOX916400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein