PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g06450
Common NameGSCOC_T00039953001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 366aa    MW: 39934.9 Da    PI: 9.6345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g06450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.5e-202469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
      Cc07_g06450 24 KGPWSPEEDDLLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 69
                     79******************************.***********985 PP
2Myb_DNA-binding54.52.8e-1778120347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
      Cc07_g06450  78 AFTPEEDDAIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 120
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.6071974IPR017930Myb domain
SuperFamilySSF466893.74E-3221117IPR009057Homeodomain-like
SMARTSM007177.7E-182372IPR001005SANT/Myb domain
PfamPF002496.6E-202469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-262577IPR009057Homeodomain-like
CDDcd001671.01E-162668No hitNo description
SMARTSM007173.9E-1575123IPR001005SANT/Myb domain
PROSITE profilePS5129421.76776125IPR017930Myb domain
CDDcd001672.47E-1278121No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2378124IPR009057Homeodomain-like
PfamPF002491.3E-1478120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MANINNNISA STTITVRKDA DRIKGPWSPE EDDLLQQLVQ KHGPRNWSLI SKSIPGRSGK  60
SCRLRWCNQL SPQVEHRAFT PEEDDAIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST  120
LKRKCSSITS SDEATNDFPL HHHHQPLKRT ASTGSGGHVS GGLSLNPGSP SGSDVSSSSL  180
PNTSSSHVFK PVARAGPVLP PHQVVETTSE NITDPPTSLS LSLPGVDSTE ASTRSTDSTQ  240
PKVPIQLLPP PPPPSPPAPV DQQNGRKQIA FGSQVQPQDK VFVPFTGELL AVMQEMIRNE  300
VRNYMMGMEQ QQQNLPQQHQ HQQQQQQMMM MHGGMGMGMC MQQASVANEG FRNAAVKRVG  360
INKID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-392312457158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-392312457158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150688.10.0transcription factor MYB73-like
SwissprotO231602e-98MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A068U1X30.0A0A068U1X3_COFCA; Uncharacterized protein
STRINGVIT_07s0129g01050.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-83myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]