PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g06340
Common NameGSCOC_T00039935001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 364aa    MW: 39879.3 Da    PI: 9.4002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g06340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31290347359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Cc07_g06340 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHS 347
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-17241286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.5E-33276347IPR003657WRKY domain
PROSITE profilePS5081130.928283349IPR003657WRKY domain
SuperFamilySSF1182906.8E-27285347IPR003657WRKY domain
SMARTSM007742.6E-38288348IPR003657WRKY domain
PfamPF031066.1E-27290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAVELMLGYR NTTDNFVTQL EESGAVQEAA CSGLESVEKL IQLFSRKEQK GTRTISSEQQ  60
NSSMEIEMDC KVETDAAVTK FKKVISLLGR TRTGHARFRR GPVPVATNPV PLMDCSTEEV  120
ADTKVYCPTP IQQIPPPLHD FHLRNRNHHV ISHQTDVNQV TSTFSQTPTG GVVVEKREPI  180
SRSISFSYSP AISHANSFIS SLTGETDSKQ LISSSSAFQL TNLSQVSSAG KPPLSSSSSF  240
KRKCISENGI SGKCSPSAGR CHCSKKRKLR LKRVIRVPAI SMKMADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSVRGC PARKHVERAL DDPAMLVVTY EGEHNHSLSV AETNAAALIL  360
ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212863481576Probable WRKY transcription factor 4
2ayd_A4e-21276348273WRKY transcription factor 1
2lex_A3e-212863481576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075565.10.0probable WRKY transcription factor 15
SwissprotQ9STX03e-89WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A068U2Z00.0A0A068U2Z0_COFCA; Uncharacterized protein
STRINGGorai.007G216700.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-79WRKY DNA-binding protein 7