PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g06200 | ||||||||
Common Name | GSCOC_T00039916001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 531aa MW: 58373.8 Da PI: 6.7107 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 171 | 220 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cc07_g06200 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.7 | 6.8e-14 | 263 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Cc07_g06200 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 313 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-9 | 171 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-15 | 171 | 228 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-17 | 172 | 228 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.701 | 172 | 228 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-31 | 172 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.87E-11 | 172 | 227 | No hit | No description |
CDD | cd00018 | 1.08E-24 | 263 | 323 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-17 | 263 | 323 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-9 | 263 | 313 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-16 | 264 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.659 | 264 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-31 | 264 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 265 | 276 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 303 | 323 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MWDLNDSPDQ TWDDESEGCS SPVDGEDDKG KRVGSVSNSS SSAVVIEDGY SDEEVGELRG 60 GSRKRGTSTS RIFGFAVSAH NDDNCSSESD QPPVTRQFFP VDESDMGVGT SSGGCNEGAS 120 SGSGVPDLPR APWVGVKFCQ SEPLGGGVLG KSTEVSQPLK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLA DYEDDLKQMS 240 NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA 300 ARAYDKAAIK CNGKDAVTNF DPSIYEDELN SSESGGGAAD HNLDLSLGNS ASKLSSSHRG 360 MAPNVDPSKD QHSASMHFQV DWRRHHDHGF RSKQENNPND VESSRRDGYS EAEAAQLLSQ 420 THLHSPGSMK PKEIQKYGQF RRGGESHIFQ MLPPQFNSSN YHFQFPSSSN GGLIGANGDL 480 SLSTSDPHWQ YNPPHFYGTA AASSGFPQQI VRPQDWTQKN GFHHHLMRPS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075403.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-132 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A068U1U5 | 0.0 | A0A068U1U5_COFCA; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-123 | AP2 family protein |