PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05960
Common NameGSCOC_T00039887001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 533aa    MW: 58846 Da    PI: 5.216
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.7e-36101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+  +++isw+e+g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell++i+
   Cc07_g05960  10 FLTKTYQLVDDPCSDDVISWNESGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFKRGRKELLTDIR 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Cc07_g05960  98 RRKTT 102
                   **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-37393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF525401.83E-6347434IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.5E-10347528IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.83E-6461529IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MCQRTVPAPF LTKTYQLVDD PCSDDVISWN ESGTTFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFKRGRK ELLTDIRRRK TTTSTQSTNQ AGAGKSLTTA  120
NPTSPANSGE DLGSSSTSFP GSKSPGSVDT LSAEQFADLS DENEKLKKDN QMLSSELAQT  180
KKQCDDLVAF LTKHVNVAPD QINSIMNQGA AVGEMNFNEN NCVVDDRVDS KEADDDDDDE  240
NGNGGSLKLF GVTLLTEKNR KRGRDDMDVG YAEVRPRKDV KTLDFCAPWM RIASCAGETS  300
KAAGQKARQN CGDSSSSPVS ISGQRKMDST ETPLSTSPSH SNFSQQRHFY LAVDRLQFKM  360
ETLVDLLGMA GRQPCLRMVV CCSTRDELDA VCSAVSRLSY ISIATLYSDQ AEAERARILE  420
KFRQTAINWN NCTADGEEKK DDKEERNKSH MIIVTDACLP LLGMGESPIS SRVLINYELP  480
TKKETYLRRM ATCLATDGIV INMVVGGEVA TLKSIEESSG LVIAEMPIHV SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-26610417125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074386.10.0heat shock factor protein HSF24
SwissprotP223351e-115HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A068U1U30.0A0A068U1U3_COFCA; Uncharacterized protein
STRINGXP_009797839.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-79heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]